DRSC/TRiP Functional Genomics Resources

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Protein Alignment ncd and Kifc5b

DIOPT Version :9

Sequence 1:NP_001287592.1 Gene:ncd / 43517 FlyBaseID:FBgn0002924 Length:700 Species:Drosophila melanogaster
Sequence 2:NP_444403.2 Gene:Kifc5b / 16580 MGIID:2137414 Length:672 Species:Mus musculus


Alignment Length:680 Identity:236/680 - (34%)
Similarity:340/680 - (50%) Gaps:115/680 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 RRGGGARAASPEPMK-----LGHRAKLRRSRS----ACDINELRGNKRTAAAPSLPSIPSKVSRL 125
            :||......:.||.|     :|...|:..||.    ...:::.:|:......|.... |...|.:
Mouse    37 KRGPDQMEDALEPAKKRTRVMGAVTKVDTSRPRGPLLSTVSQTQGHNAAQKGPKKTG-PGGCSAV 100

  Fly   126 GGALTVSSQRLVRPAAPSSITATAVKRPPVTRPAPRAAGGAAAKKPAGTGAAASSGAAAAAPKRI 190
            |   ||...:...||||:.         |.|..||...|..|.|:||                  
Mouse   101 G---TVLRSQKPAPAAPAK---------PGTSTAPVVVGKRAGKRPA------------------ 135

  Fly   191 APYDFKARFHDLLEKHKVLKTKYEKQTEDMGELES--MPQQLEETQNKLI-------ETESSLKN 246
              :|.|.:..||.|:.|    :|.::||.: |||:  :.:||.|.|.:..       ..|..|.:
Mouse   136 --WDLKGQLCDLNEELK----RYREKTETL-ELENRGLREQLREVQEQATTLGTERNTLEGELAS 193

  Fly   247 TQSDNECLQRQVKQHTAKIETITSTLGRTKEELSELQAIHEKVKTEHAALST------------- 298
            .:|..|..|::::..:|::..:...||..:..|.|||....:::.|.:.|||             
Mouse   194 VRSRAEQDQQRLETLSARVLELEECLGTRERLLQELQGERLQLQEERSTLSTQLEEQERRFQATE 258

  Fly   299 --------EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRI 355
                    |||.|||:||..:....:|.       ::|:...|||:.|||.:.:|:||||||||:
Mouse   259 AALSSSQEEVVCLRQKTEAQVTLLAEQG-------DRLYGLEMERRRLHNQLQELKGNIRVFCRV 316

  Fly   356 RPPLESEENRMCCTWTY-------HDEST-VELQSIDAQAKSKMG------QQIFSFDQVFHPLS 406
            ||.||.|.........:       .|..| :.|...|.:..:..|      :..||||:||.|.|
Mouse   317 RPVLEGESTPSPGFLVFPPGPAGPSDRPTGLSLSRSDDRRSTLTGAPAPTVRHDFSFDRVFPPGS 381

  Fly   407 SQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMD----GVPESVGVIPRTVDLLFDSIRG 467
            .|.::||.::.|:|||||||.:|||||||||||||:||:    |.|:..|:|||.:..||...:.
Mouse   382 KQEEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPRGDPQLAGLIPRAMRHLFSVAQE 446

  Fly   468 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQK-----DMEIRMAKNNKNDIYVSNITEETVLDPNH 527
            ....||.|...|:::|||||.:.|||:...:     :.|||.|.....::.|:|.....|.....
Mouse   447 MSGQGWTYSFVASYVEIYNETVRDLLATGPRKGQGGECEIRRASPGSEELTVTNARYVPVSCEKE 511

  Fly   528 LRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSE------- 585
            :..|:|.|..|||.|.||.|:||||||:|.:|::.|.||.:.......:|||||||||       
Mouse   512 VEALLHLAHQNRAVAHTAQNKRSSRSHSVFQLQISGEHAARGLQCGAPLNLVDLAGSERLDPGLP 576

  Fly   586 -SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSP 649
             .|....|:.||:.||.|||.|..||:||..|:.|:||||||||:||..||||::|.|||:|:||
Mouse   577 LGPGERDRLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISP 641

  Fly   650 FQDCFQESVKSLRFAASVNSCKMTKAKRNR 679
            .::...||:.|||||:.||.|.:..|:.|:
Mouse   642 LEENVSESLNSLRFASKVNQCVIGTAQANK 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ncdNP_001287592.1 KISc_C_terminal 346..672 CDD:276817 156/356 (44%)
KISc 348..678 CDD:214526 156/360 (43%)
Kifc5bNP_444403.2 TPR_MLP1_2 138..249 CDD:285204 31/115 (27%)
SYCE1 169..298 CDD:291886 33/135 (24%)
KISc_C_terminal 307..664 CDD:276817 156/356 (44%)
KISc 309..665 CDD:214526 155/355 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 247 1.000 Domainoid score I2153
eggNOG 1 0.900 - - E2759_KOG0239
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H83229
Inparanoid 1 1.050 319 1.000 Inparanoid score I2513
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D181609at33208
OrthoFinder 1 1.000 - - FOG0000325
OrthoInspector 1 1.000 - - otm43808
orthoMCL 1 0.900 - - OOG6_101893
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1242
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.730

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