DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Drice and csp-3

DIOPT Version :10

Sequence 1:NP_524551.2 Gene:Drice / 43514 FlyBaseID:FBgn0019972 Length:339 Species:Drosophila melanogaster
Sequence 2:NP_493011.2 Gene:csp-3 / 190006 WormBaseID:WBGene00000821 Length:139 Species:Caenorhabditis elegans


Alignment Length:147 Identity:39/147 - (26%)
Similarity:60/147 - (40%) Gaps:43/147 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 FFIQ---ACQG------DRLDGGVTMQRSQTETDGDSSMSYKIPVH------ADFLIAYSTVPGF 255
            ||:|   .|.|      ||:.......:|            |.|.|      ||.|:::||.|||
 Worm    11 FFLQRAVRCDGFIDNFFDRIPKFFQFMKS------------KFPSHQTSSSQADLLVSFSTSPGF 63

  Fly   256 YSWRNTTRGSWFMQSLCAELAANGKRLDILTLLTFVCQRVAVDFES------CTPDTPEMHQQKQ 314
            .|:::.|:.:|::|.|...:..|.|...:..|||...:||...:|:      |          ||
 Worm    64 LSFKDETKDTWYIQELYRVIIENAKDTHLADLLTETNRRVVEKYEADKVVFVC----------KQ 118

  Fly   315 IPCITTMLTRILRFSDK 331
            .|...:..|:.|.|..:
 Worm   119 APEFWSRFTKQLFFMSR 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DriceNP_524551.2 CASc 86..330 CDD:214521 39/144 (27%)
csp-3NP_493011.2 CASc <11..132 CDD:444667 38/142 (27%)

Return to query results.
Submit another query.