DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rnb and Armc5

DIOPT Version :9

Sequence 1:NP_651726.1 Gene:Rnb / 43513 FlyBaseID:FBgn0039696 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_666317.2 Gene:Armc5 / 233912 MGIID:2384586 Length:926 Species:Mus musculus


Alignment Length:986 Identity:203/986 - (20%)
Similarity:329/986 - (33%) Gaps:274/986 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 STDRTVIYKCLVKLRTDLVKDKNGIVLFRTAGGVHIMVRLITKLN-------------------- 62
            :|:.|.:.:.|:.|||..:|...||..||..||:..::.|:.:..                    
Mouse    34 ATNETPLGRALLALRTRHIKAAEGIERFRARGGLRPLLALLRRTAAAGPAPSQAASGSAPSSVAS 98

  Fly    63 -----------------------EKIMEVVLSILGNCCTDEQSCIEAVECKVIHPLVTILKTIPN 104
                                   .|.:::.||||.||||:.....|......|.||||||:.:..
Mouse    99 AGSTPGHAPAAESLLTPSLPMRLRKTLDLALSILANCCTEGACRAEVRRLGGILPLVTILQCVKT 163

  Fly   105 PLIQCRACRMLGNIAKSKKASQCLTVHYAAIAPAICHIIESTSAVQTRIMAFRVCRFLLASSQFL 169
            ..||.|..|.|||:|...::  |..:|.|...|   .::||.:|.|              .||.|
Mouse   164 DSIQNRTARALGNLAMEPES--CRDIHSAGAVP---FLVESLTACQ--------------DSQCL 209

  Fly   170 KYFLMANGFQQLMRIFLAVMKNEEASKEPVPDIEMSTLIGLKRNQHREKYFEEVA-RNLEGVRSD 233
                     |.::|    .::|...|.                 |||....::.| |.|..:.:.
Mouse   210 ---------QSIVR----ALRNLADSP-----------------QHRLALAQQGAVRPLAELLAT 244

  Fly   234 IFDHQMLKNSTRNCDYALPKENEAAVELALEILKCLVLISAQQIGLKVWESISWNTSLASIVCFV 298
            ..|               |....|.|...||:.:......|:|:.|        ..:|..:|...
Mouse   245 APD---------------PALTAALVRALLELSRGCSRACAEQLSL--------GGALGPLVSLA 286

  Fly   299 KEDGDQ-RASALKILSNFCKDPFAFYMLSTADAIVAACEMLMAVNMAKPLSESESRHCINIILTL 362
            ...... |.:|:.||:|.|........|..|..:......|.........|.:..:..:..:..|
Mouse   287 SHPKRAIREAAILILANLCAQGLVRPALGNAGGVEVLLGELRRRRSPGGSSSATQQPLVRAVCLL 351

  Fly   363 STDACSRSKIRRCGALRKLVAMIRDSNSQSERSSLFHILYNFQYDNLSMELMLYEGLMPMLVREL 427
            ..:|.:|:::|..|.|..|:.:::|..:.:....:...|..|.||..::..:...||:|:|.|:|
Mouse   352 CREAINRARLRDAGGLELLMGLLQDPGASAWHPRVVAALVGFLYDTGALGKLQALGLVPLLARQL 416

  Fly   428 NDYLTSDDEH---------HKRRRDERLQGGKKRKLTDPTTPETLSKFSKTHETLGSDFESPSSS 483
            ......::|.         .:.|...:.:||..|.|       .|...|:.:.....|. ||..|
Mouse   417 CGEAGEEEEEGIEAASWDFPEERTSGQAEGGSFRSL-------RLWLISEGYAAGPGDI-SPDWS 473

  Fly   484 PRSYRTTSPCSSRSMSPVCTDLLTNDDDDNYSPACSDDDEDEDDSTNNSNLDTRER--RI-AANR 545
            |.  |...|..|.|:||              :|.          .|:.|...|..:  || ||..
Mouse   474 PE--RCPMPEPSESVSP--------------TPG----------QTSMSTPRTLRKPGRIPAATP 512

  Fly   546 SQP----SNVLDILKLIEEGSEPIDDPLSDKEDLEELSSDV-----PPKLAPFR---NTTCNTID 598
            .:|    ...|.:|....:..:| ...|.....|..|.:.|     ||.....|   ..|||   
Mouse   513 EEPWGQEGPALLLLSRFSQAPDP-SGALVTGPALCGLLAYVTGAPGPPNPRALRILARLTCN--- 573

  Fly   599 IIENLIYRITLMVNKRVELGKPETLD--------TLIRAIKLFG-SNNNFPNALTNILLESQFFA 654
                                 |..|:        .|:||..:.| |.:::|              
Mouse   574 ---------------------PACLEAFVRTYGAALLRAWLVLGVSPDDWP-------------- 603

  Fly   655 QIIKHG-VVHQLYQFTKLKEIRKDGFAFLETLTNVGESNYGKEELVRLLRCDDVISQQRAAISVA 718
              :.|. .||:       .:.|:.|...|:.||...||.:|...|..||.......:...|:::.
Mouse   604 --VPHARPVHR-------SQHRELGEMLLQNLTVQAESPFGVGALTHLLLSGSPEDRVACALTLP 659

  Fly   719 YIVKSHRLLYQFLYDGNALNMLFDMMLRKKTEDHYADEAADAVTSMARYTLGIVMPEAEPA---- 779
            :|.:...|..:.|.|...|.:|...:.:......:...|||:::.:.    |:|.|.|.|.    
Mouse   660 FICRKPTLWRRLLLDQGGLRLLLTALTQPAPHPLFLFFAADSLSCLQ----GLVSPTASPVPLPA 720

  Fly   780 -----ESTAGICNQIANDTAPLHANCDMRFLVGHGADSTSIGFNKQLLCDTSEVFNKMLNSDFRE 839
                 :|......:.....||..|. |:.|::..|   ..:...:......|..|..:|:..|.|
Mouse   721 LPLELDSPPPCLYEPLLGPAPAPAP-DLHFVLDSG---LQLPAQRAASAAASPFFRALLSGSFAE 781

  Fly   840 GHQGEIQLPDYTASGLRYFLHLIVCQERHL-------------TEPDYPAL----LQAYEMARVY 887
            .....:.|...:.......||       ||             ..|..|.|    .:|.|.|..:
Mouse   782 AQMDLVPLRGLSPGAAWPVLH-------HLHGCRGCGAALGPVPPPGQPLLGSKAEEALEAAGRF 839

  Fly   888 IMPDMEAVLQQ 898
            ::|.:|..|::
Mouse   840 LLPALEEELEE 850

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RnbNP_651726.1 ARM 44..147 CDD:237987 36/145 (25%)
armadillo repeat 49..78 CDD:293788 10/71 (14%)
armadillo repeat 84..118 CDD:293788 14/33 (42%)
BTB 801..904 CDD:197585 22/115 (19%)
Armc5NP_666317.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 82..111 0/28 (0%)
ARM 1 139..179 15/39 (38%)
ARM 143..254 CDD:237987 39/174 (22%)
armadillo repeat 145..177 CDD:293788 13/31 (42%)
ARM 2 181..221 14/71 (20%)
armadillo repeat 185..220 CDD:293788 13/64 (20%)
ARM 3 223..263 12/71 (17%)
ARM 4 267..306 10/46 (22%)
armadillo repeat 270..304 CDD:293788 9/41 (22%)
ARM 5 307..354 5/46 (11%)
ARM 6 355..399 11/43 (26%)
ARM 7 401..440 7/38 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 472..516 16/69 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167837780
Domainoid 1 1.000 104 1.000 Domainoid score I6728
eggNOG 1 0.900 - - E1_28KHM
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 104 1.000 Inparanoid score I4939
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007945
OrthoInspector 1 1.000 - - oto94489
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR23312
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5326
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.880

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