DRSC/TRiP Functional Genomics Resources

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Protein Alignment sro and RDH5

DIOPT Version :9

Sequence 1:NP_651725.1 Gene:sro / 43512 FlyBaseID:FBgn0262112 Length:335 Species:Drosophila melanogaster
Sequence 2:NP_001186700.1 Gene:RDH5 / 5959 HGNCID:9940 Length:318 Species:Homo sapiens


Alignment Length:314 Identity:97/314 - (30%)
Similarity:147/314 - (46%) Gaps:40/314 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 RQQLKVDSRHVVLITGCDSGLGHSMAVYCHESLHMTVISCCHNIKSEGAKLLQGLASAKDGLSRM 82
            ||.|.. |...|.|||||||.|..:|:...:.....:.||   :...||:.||.:||     ||:
Human    21 RQSLPA-SNAFVFITGCDSGFGRLLALQLDQRGFRVLASC---LTPSGAEDLQRVAS-----SRL 76

  Fly    83 HTLELDLLEPDSIRLVHRQLRDILAKDPSYRLTALINNAGVM-CFGEFEWQLTEQIEAQINCNLL 146
            ||..||:.:|.|::...:.: ::..|:..  |..|:|||||. ..|...|...:..:..:|.|.:
Human    77 HTTLLDITDPQSVQQAAKWV-EMHVKEAG--LFGLVNNAGVAGIIGPTPWLTRDDFQRVLNVNTM 138

  Fly   147 GTMRLTHELLPLLRQQQGRIINVTSHCGLQALPALGPYAASKAALRFWTDSLRVELQQYGMEVVN 211
            |.:.:|..|||||:|.:||:||:||..|..|... |.|..||..|..::||||.::..:|:.|..
Human   139 GPIGVTLALLPLLQQARGRVINITSVLGRLAANG-GGYCVSKFGLEAFSDSLRRDVAHFGIRVSI 202

  Fly   212 FIPGSFVLD-SNIAARQQQHAQKMREAFSAEQHALYDTYFEAF-NGYLKVLSGFKPPNRLRN--- 271
            ..||.|... :|:.:.:    :.::..::....|....|..|| ..|||:      ..|:.|   
Human   203 VEPGFFRTPVTNLESLE----KTLQACWARLPPATQAHYGGAFLTKYLKM------QQRIMNLIC 257

  Fly   272 ESLLAK----FKDALTSSQPLALYIEEPRRYRLYRWL-FTLCPTPLVD----WL 316
            :..|.|    .:.|||:..|...|  .|.......|| .:..|..|||    |:
Human   258 DPDLTKVSRCLEHALTARHPRTRY--SPGWDAKLLWLPASYLPASLVDAVLTWV 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sroNP_651725.1 17beta-HSD-like_SDR_c 27..300 CDD:187632 86/282 (30%)
adh_short 28..229 CDD:278532 69/202 (34%)
RDH5NP_001186700.1 type2_17beta_HSD-like_SDR_c 30..306 CDD:187665 92/299 (31%)
PRK08017 31..308 CDD:181198 92/300 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1610
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.928771 Normalized mean entropy S2670
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D370032at33208
OrthoFinder 1 1.000 - - FOG0000161
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X110
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
65.770

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