DRSC/TRiP Functional Genomics Resources

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Protein Alignment sro and rdh5

DIOPT Version :10

Sequence 1:NP_651725.1 Gene:sro / 43512 FlyBaseID:FBgn0262112 Length:335 Species:Drosophila melanogaster
Sequence 2:NP_001011363.1 Gene:rdh5 / 496830 XenbaseID:XB-GENE-1011657 Length:319 Species:Xenopus tropicalis


Alignment Length:325 Identity:90/325 - (27%)
Similarity:138/325 - (42%) Gaps:60/325 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 RQQLKVDSRHVVLITGCDSGLGHSMAVYCHESLHMTVISCCHNIKSEGAKLLQGL---ASAKDGL 79
            ||::...|...|.|||||:|.|:.:|               ..:..:|.::|.|.   |.|.|..
 Frog    21 RQKISRFSNKHVFITGCDTGFGNLLA---------------KRLSRKGFQVLAGCLTQAGADDLQ 70

  Fly    80 SRMHT-LELDLLEPDSIRLVHRQLRDILAKDPSYRLTALINNAGVM-CFGEFEWQLTEQIEAQIN 142
            ....| |:..||:..|...:::.:..:.::.....|..|:||||:. ..|..||...:..:..::
 Frog    71 KACPTGLKCTLLDVTSQESINKAVEWVKSEVGDRGLYGLVNNAGIANPIGPTEWMTIQDYKRVMD 135

  Fly   143 CNLLGTMRLTHELLPLLRQQQGRIINVTSHCGLQALPALGPYAASKAALRFWTDSLRVELQQYGM 207
            .|..||:.::...|.|:::.||||||:.|..|..:... |.|..||.|:..::||||.::|.:|:
 Frog   136 VNAFGTIAVSLSFLSLIKKAQGRIINMASILGRISANG-GGYCVSKYAVEAFSDSLRRDMQHFGV 199

  Fly   208 EVVNFIPGSFV-----LDSNIAARQQQHAQKMREAFSAEQHALY-DTYFEAFNGYLKVLSGFKPP 266
            .|....||.|.     |||     .::..|.:.:....|....| |.||:.   ||||       
 Frog   200 RVCIIEPGFFKTAVTNLDS-----IERSLQLLWDQMPPETKMTYGDKYFQQ---YLKV------- 249

  Fly   267 NRLRNESLLAKF-KDALTSSQPL----ALYIEEPRRYRLYRWLFTLCPTPLVDWLTVRFCAMPTY 326
                 :.|:..| .||..|..|.    ||....||......|     ...|| ||...:  ||.:
 Frog   250 -----QRLIMNFICDADISKVPKCIEHALQARYPRTRYSPGW-----DAKLV-WLPASY--MPAF 301

  Fly   327  326
             Frog   302  301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sroNP_651725.1 17beta-HSD-like_SDR_c 27..300 CDD:187632 80/288 (28%)
rdh5NP_001011363.1 Rossmann-fold NAD(P)(+)-binding proteins 30..307 CDD:473865 87/316 (28%)

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