DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATPsyngamma and atp5f1c

DIOPT Version :9

Sequence 1:NP_524550.1 Gene:ATPsyngamma / 43507 FlyBaseID:FBgn0020235 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_001016407.1 Gene:atp5f1c / 549161 XenbaseID:XB-GENE-970730 Length:295 Species:Xenopus tropicalis


Alignment Length:299 Identity:170/299 - (56%)
Similarity:227/299 - (75%) Gaps:9/299 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 MMQRTQLLLPLAMEATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKA 66
            |:.|:.:|:   :::.....|.|.|||||.|:.||||:|||||||:|||||:||||:||||:||.
 Frog     1 MLSRSSVLI---LQSQWGQGQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYSRAERELKP 62

  Fly    67 ARPYGIGAQQFFEKTEIQ-PDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQ-DEANTKV 129
            ||.||.|:...:||.||: |::|  .|.|:|.|:||||||||:|:.||:.|:.|:.. ..|..:|
 Frog    63 ARVYGTGSLALYEKAEIKAPEDK--KKNLIIGVSSDRGLCGAIHSSVAKTIKNEITSLSNAGKEV 125

  Fly   130 FCV--GDKSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSV 192
            ..|  |||.|.:|.|.:..::|:...||||.||:|.|||.||:|:|.:||::.:|.:|:|||:||
 Frog   126 MVVGIGDKLRGLLQRTHAGHLLITFKEVGRKPPSFGDASIIASELLNSGYEFDQGSVVFNRFRSV 190

  Fly   193 VSYQCSTLPIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSSRMTAMD 257
            :||:....|.||..||..||.::|||.:|:||:::|.||:||::|:||:||...||||:||||||
 Frog   191 ISYKTEEKPFFSLDTVANSESISVYDDIDADVLRNYQEFTLANIIYYTLKESTTSEQSARMTAMD 255

  Fly   258 NASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 296
            ||||||.|||||||||||||||||||:||||||||||||
 Frog   256 NASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPsyngammaNP_524550.1 F1-ATPase_gamma 27..293 CDD:213394 159/269 (59%)
atp5f1cNP_001016407.1 ATPsyn_F1gamma 23..294 CDD:273469 162/272 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 309 1.000 Domainoid score I1321
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3792
Inparanoid 1 1.050 316 1.000 Inparanoid score I2504
OMA 1 1.010 - - QHG54014
OrthoDB 1 1.010 - - D518450at33208
OrthoFinder 1 1.000 - - FOG0004011
OrthoInspector 1 1.000 - - oto103825
Panther 1 1.100 - - LDO PTHR11693
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R120
SonicParanoid 1 1.000 - - X3294
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1313.110

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