DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATPsyngamma and atp5f1c

DIOPT Version :9

Sequence 1:NP_524550.1 Gene:ATPsyngamma / 43507 FlyBaseID:FBgn0020235 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_001315480.1 Gene:atp5f1c / 336957 ZFINID:ZDB-GENE-030131-8901 Length:293 Species:Danio rerio


Alignment Length:287 Identity:172/287 - (59%)
Similarity:220/287 - (76%) Gaps:8/287 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 ATMLAQ--QQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQQFF 78
            |..|.|  |.|.|||||.|:|||||:|||||||:|||||:||||:||||.||.||.||.||...:
Zfish     8 AVFLPQCGQVRNMATLKDITIRLKSIKNIQKITKSMKMVAAAKYSRAERSLKPARVYGTGALALY 72

  Fly    79 EKTEIQ-PDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEANTK---VFCVGDKSRAI 139
            ||.||: |::|  .|.|:|.|:||||||||:|:.||:.|:.|:.:.....|   |..:|||.||:
Zfish    73 EKAEIKAPEDK--NKHLIIGVSSDRGLCGAIHSSVAKAIKSEIGKLSGAGKEVMVVNIGDKLRAL 135

  Fly   140 LSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTLPIFS 204
            |.|.:||:||:...||||.||||.|||.||.|:|.:||::.:|.||||||:||:||:....|::|
Zfish   136 LYRTHGKHILLNCKEVGRKPPTFTDASIIATELLNSGYEFDQGSIVYNRFRSVISYKTDEKPLYS 200

  Fly   205 GSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSSRMTAMDNASKNAGEMIDK 269
            ..||..||.:.:||.:|:||:::|.||:|.::|::.:||...||||:||||||:|||||.|||||
Zfish   201 MDTVASSENMGIYDDIDADVLRNYQEFALVNIIYFGLKESTTSEQSARMTAMDSASKNASEMIDK 265

  Fly   270 LTLTFNRTRQAVITRELIEIISGAAAL 296
            ||||||||||||||:||||||||||||
Zfish   266 LTLTFNRTRQAVITKELIEIISGAAAL 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPsyngammaNP_524550.1 F1-ATPase_gamma 27..293 CDD:213394 161/269 (60%)
atp5f1cNP_001315480.1 ATPsyn_F1gamma 21..292 CDD:273469 164/272 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593398
Domainoid 1 1.000 315 1.000 Domainoid score I1257
eggNOG 1 0.900 - - E1_COG0224
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3792
Inparanoid 1 1.050 322 1.000 Inparanoid score I2494
OMA 1 1.010 - - QHG54014
OrthoDB 1 1.010 - - D518450at33208
OrthoFinder 1 1.000 - - FOG0004011
OrthoInspector 1 1.000 - - oto41717
orthoMCL 1 0.900 - - OOG6_100847
Panther 1 1.100 - - LDO PTHR11693
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R120
SonicParanoid 1 1.000 - - X3294
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1716.800

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