DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATPsyngamma and atp3

DIOPT Version :9

Sequence 1:NP_524550.1 Gene:ATPsyngamma / 43507 FlyBaseID:FBgn0020235 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_595430.1 Gene:atp3 / 2539839 PomBaseID:SPBC1734.13 Length:301 Species:Schizosaccharomyces pombe


Alignment Length:272 Identity:107/272 - (39%)
Similarity:172/272 - (63%) Gaps:5/272 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 ATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQPDEKAEP 91
            ||||.|..||||:|||:|||:::|.|:..|..||:|.::|:..|...:.:.|::...:..|  |.
pombe    32 ATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVFKEAGTKAPE--EG 94

  Fly    92 KKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEA--NTKVFCVGDKSRAILSRLYGKNILMVANE 154
            |.|::|.:||:||||.:|:.::||||.||...:.  ||.:..:|:|.|..|.|...::..:....
pombe    95 KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLRFCPESFYLTFAH 159

  Fly   155 VGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTLPIFSGSTVEKSEKLAVYDS 219
            :|...|:|.:|.:|::.:|:...||....:|||:|.|.||::.....:::...:.:|..|:.|:.
pombe   160 IGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYTTKAINESPNLSAYEV 224

  Fly   220 LDSDVVKSYLEFSLASLIFYTMKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITR 284
            .| :|.:..:||:.|:.||..|.|..|||.|||..||:||||:||:||:|.::.:||.|||.||.
pombe   225 SD-EVHQPLMEFAFANAIFSAMAEAHCSEMSSRRNAMENASKSAGDMINKFSIQYNRQRQASITN 288

  Fly   285 ELIEIISGAAAL 296
            |||:|::||.:|
pombe   289 ELIDIVTGANSL 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPsyngammaNP_524550.1 F1-ATPase_gamma 27..293 CDD:213394 104/267 (39%)
atp3NP_595430.1 AtpG 35..301 CDD:223302 104/269 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 192 1.000 Domainoid score I712
eggNOG 1 0.900 - - E1_COG0224
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3792
Inparanoid 1 1.050 193 1.000 Inparanoid score I1032
OMA 1 1.010 - - QHG54014
OrthoFinder 1 1.000 - - FOG0004011
OrthoInspector 1 1.000 - - oto101269
orthoMCL 1 0.900 - - OOG6_100847
Panther 1 1.100 - - LDO PTHR11693
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R120
SonicParanoid 1 1.000 - - X3294
TreeFam 1 0.960 - -
1413.860

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