DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATPsyngamma and Atp5c1

DIOPT Version :9

Sequence 1:NP_524550.1 Gene:ATPsyngamma / 43507 FlyBaseID:FBgn0020235 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_065640.2 Gene:Atp5c1 / 11949 MGIID:1261437 Length:298 Species:Mus musculus


Alignment Length:279 Identity:163/279 - (58%)
Similarity:217/279 - (77%) Gaps:6/279 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 QQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQQFFEKTEIQ-P 85
            |.|.|||||.|:.||||:|||||||:|||||:|||||||||:||.||.||.|:...:||.:|: |
Mouse    21 QVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGTGSLALYEKADIKAP 85

  Fly    86 DEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEANTK---VFCVGDKSRAILSRLYGKN 147
            ::|  .|.|:|.|:||||||||:|:.||:.::.|:|...|..|   :..||:|.:.||.|.:...
Mouse    86 EDK--KKHLIIGVSSDRGLCGAIHSSVAKQMKNEVAALTAAGKEVMIVGVGEKIKGILYRTHSDQ 148

  Fly   148 ILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVSYQCSTLPIFSGSTVEKSE 212
            .|:...:|||.||||.|||.||.|:|.:||::.||.|::|:||||:||:....||||.:|:..:|
Mouse   149 FLVSFKDVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIFSLNTIATAE 213

  Fly   213 KLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRT 277
            .:::||.:|:||:::|.|::||:||:|::||...||||:||||||||||||.:||||||||||||
Mouse   214 TMSIYDDIDADVLQNYQEYNLANLIYYSLKESTTSEQSARMTAMDNASKNASDMIDKLTLTFNRT 278

  Fly   278 RQAVITRELIEIISGAAAL 296
            ||||||:||||||||||||
Mouse   279 RQAVITKELIEIISGAAAL 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPsyngammaNP_524550.1 F1-ATPase_gamma 27..293 CDD:213394 155/269 (58%)
Atp5c1NP_065640.2 ATPsyn_F1gamma 26..297 CDD:273469 158/272 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848005
Domainoid 1 1.000 301 1.000 Domainoid score I1407
eggNOG 1 0.900 - - E1_COG0224
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3792
Inparanoid 1 1.050 307 1.000 Inparanoid score I2598
Isobase 1 0.950 - 0 Normalized mean entropy S748
OMA 1 1.010 - - QHG54014
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004011
OrthoInspector 1 1.000 - - oto93591
orthoMCL 1 0.900 - - OOG6_100847
Panther 1 1.100 - - LDO PTHR11693
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R120
SonicParanoid 1 1.000 - - X3294
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.740

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