DRSC/TRiP Functional Genomics Resources

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Protein Alignment IntS11 and Cpsf100

DIOPT Version :10

Sequence 1:NP_651721.1 Gene:IntS11 / 43506 FlyBaseID:FBgn0039691 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_651658.1 Gene:Cpsf100 / 43426 FlyBaseID:FBgn0027873 Length:756 Species:Drosophila melanogaster


Alignment Length:643 Identity:150/643 - (23%)
Similarity:254/643 - (39%) Gaps:130/643 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSH-IDCVIIS 67
            ||:..:....|....|.:|.:....|:||||.     ||:...:|   :.|.....| :|.|::|
  Fly     5 IKLHTISGAMDESPPCYILQIDDVRILLDCGW-----DEKFDANF---IKELKRQVHTLDAVLLS 61

  Fly    68 HFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKDCMKK 132
            |....|.|||||:...:|...|||.|.|...:..:.:.|: .::....|:.:.|:...:....:|
  Fly    62 HPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDL-YMSHFNMGDFDLFSLDDVDTAFEK 125

  Fly   133 VIPVTLHQSMMVDTDLEIKAY-------YAGHVLGAAMFW--IKVGSQSVVYTGDYNMTPDRHLG 188
            :..:..:|::    .|:.|.|       .|||::|..: |  :|||.:.:||..|:|...:|||.
  Fly   126 ITQLKYNQTV----SLKDKGYGISITPLNAGHMIGGTI-WKIVKVGEEDIVYATDFNHKKERHLS 185

  Fly   189 AAWIDKC-RPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRAQELCILL 252
            ...:|:. ||.|||:::..|...:..:|.|:...:..:.:.|...|.|||.|...||..||..:|
  Fly   186 GCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHML 250

  Fly   253 ETYWERMN---LKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHRNMFDFKHIK---PFD 309
            :..|:...   :.|.:.....::.....:.|..|.|.:.|:.|.|  ...|.|.||||:   ...
  Fly   251 DQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHSLA 315

  Fly   310 KAYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGTVGNKILGGAKKVEFEN 374
            ..|....|..||.|:...|.:|.:..:|.:||.|.||.:|:......||:.              
  Fly   316 DVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRTSPGTLA-------------- 366

  Fly   375 RQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAGKMKFLRSKIKDEFNLETYMPA 439
                                    |:|::||.|       |:..::...|....:...||.|:..
  Fly   367 ------------------------MELVENCAP-------GKQIELDVRRRVDLEGAELEEYLRT 400

  Fly   440 NGETCVISTPVKIPVDASVSLLKAEARSYNAQPPDPKRRRLI---HGVLVMKDNR----IMLQNL 497
            .||..   .|:.:..|       .|..| :::..|.....:|   |.::|..:.|    ....| 
  Fly   401 QGEKL---NPLIVKPD-------VEEES-SSESEDDIEMSVITGKHDIVVRPEGRHHSGFFKSN- 453

  Fly   498 TDALKEIGINRHVMRF---TSKVKMDDSGPVIR----------------TSERLKTLLEEKLAGW 543
                     .||.:.|   ..|||.|:.|.:|.                ..|:.|..::::..|.
  Fly   454 ---------KRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKENVKKEEPGI 509

  Fly   544 TVTMQENGSIAIESVEVKVEEDEKDPKQKNILISWTNQDEDI-----GAYILNVLQNM 596
            ....|.||.|....|::..:..:...::|.|.::...|..|.     |..:|.:|..:
  Fly   510 GAEQQANGGIVDNDVQLLEKPTKLISQRKTIEVNAQVQRIDFEGRSDGESMLKILSQL 567

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IntS11NP_651721.1 YSH1 5..416 CDD:440849 108/429 (25%)
INTS11-like_MBL-fold 6..204 CDD:293849 58/208 (28%)
Cpsf100NP_651658.1 CPSF2-like_MBL-fold 7..204 CDD:293851 58/210 (28%)
Beta-Casp 243..369 CDD:214983 34/163 (21%)
RMMBL 539..600 CDD:462191 6/29 (21%)
CPSF100_C 617..753 CDD:463836
Blue background indicates that the domain is not in the aligned region.

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