DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dmrt99B and Dmrta2

DIOPT Version :9

Sequence 1:NP_524549.1 Gene:dmrt99B / 43495 FlyBaseID:FBgn0039683 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001101421.2 Gene:Dmrta2 / 313471 RGDID:1308173 Length:536 Species:Rattus norvegicus


Alignment Length:610 Identity:178/610 - (29%)
Similarity:225/610 - (36%) Gaps:257/610 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VLGAL--PPAFFLRAASERYQRTPKCARCRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVM 80
            |.|.|  .|...|||| |:|.||||||||||||||||||||||||||:||:||||||||||||||
  Rat    45 VAGGLLRAPPLLLRAA-EKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVM 108

  Fly    81 AAQVALRRQQAQEENEARELGLLYTSVPG----QQNG----------------SDSATPTPHSPN 125
            ||||||||||||||||||||.|||.:..|    ..||                :|...|...:| 
  Rat   109 AAQVALRRQQAQEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVCATDGGGPGAGAP- 172

  Fly   126 HSGSGGSGSGGSGQNGVFHGGIPSPPSDGFEASSTPNHHQQSQQQQQAHHQQHLSHPHQQSQRFN 190
             :||.| |:||:|               |.||                           :.|:| 
  Rat   173 -AGSAG-GAGGAG---------------GAEA---------------------------KLQKF- 192

  Fly   191 GNESDTDGRTRSEHLSVGFSPTRTELDESPVSKRGAALSNETDQDTGSESGSPSSPRPKVAGLFN 255
                                      |..|              .|..::|.|.||:|       
  Rat   193 --------------------------DLFP--------------KTLLQAGRPDSPQP------- 210

  Fly   256 LTASLSPARTGPPSSPESDLDVDSAPDEATPE---NLSLKKEDSQSPPNTPAENLHLLRSFSSSH 317
                       ||..|.|....||.|..::||   ....:..|.:|...:|     |.|  :|..
  Rat   211 -----------PPGKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSP-----LAR--ASKE 257

  Fly   318 AQGFLPYHHTQFLAAAGLPAHHHPAAHSPHHQQQQQQQQQQQNHL-----------PQHHQQQQQ 371
            |.|..|    ....|:|......|.:.||...:...:..:::...           |        
  Rat   258 AGGSCP----GSAGASGGGEEDSPGSSSPLGSESGSEADKEEAEAAPTPGLGGGPGP-------- 310

  Fly   372 QQQQQQRSPIDVLMRVFPNRRRSDVEQLMQRFRGDVLQAMECML--------------------- 415
                :||:|:|:|.||||..||..:|.::|...|||:||:|.:|                     
  Rat   311 ----RQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPLEKAA 371

  Fly   416 -----AGEDLG------------------QTPPQVPP----------SP----PFPMKSAFSPLV 443
                 |.||..                  ||.|..||          :|    ....:||||||.
  Rat   372 VSAAAAVEDAWPGRVEAAAAGGAGLPAPLQTGPAAPPHHRPLLAGAMTPGALGSLSSRSAFSPLQ 436

  Fly   444 P-PSVFG--------------SPTHRYHPFMQAHAKRF-LTAPYAGTGYLP-------------- 478
            | .|.||              ||....:....||::.. ..|||:..|.:|              
  Rat   437 PNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGLAFMAPYSTAGLVPTLGFRPPMDYAFSD 501

  Fly   479 -----GVLSAADIEQSESNGAGGIG 498
                 ...:||.:.:....|.|..|
  Rat   502 LMRDRSAAAAAAVHKEPGYGGGLYG 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dmrt99BNP_524549.1 DM 37..83 CDD:279137 43/45 (96%)
CUE_DMA_DMRTA1 378..415 CDD:270600 18/36 (50%)
Dmrta2NP_001101421.2 DM 65..111 CDD:395608 43/45 (96%)
CUE_DMA_DMRTA2 311..352 CDD:270601 20/40 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 104 1.000 Domainoid score I6561
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 202 1.000 Inparanoid score I3690
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1573364at2759
OrthoFinder 1 1.000 - - FOG0003936
OrthoInspector 1 1.000 - - oto97533
orthoMCL 1 0.900 - - OOG6_108101
Panther 1 1.100 - - O PTHR12322
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X984
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.060

Return to query results.
Submit another query.