DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dmrt99B and Dmrta1

DIOPT Version :9

Sequence 1:NP_524549.1 Gene:dmrt99B / 43495 FlyBaseID:FBgn0039683 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001101415.1 Gene:Dmrta1 / 313352 RGDID:1309796 Length:488 Species:Rattus norvegicus


Alignment Length:559 Identity:157/559 - (28%)
Similarity:212/559 - (37%) Gaps:221/559 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SLPSGVDMQNLMSQHPVLGAL--PPAFFLRAASER---------------------YQRTPKCAR 43
            |:.||:         ||....  ||..|||:.:..                     |.|||||||
  Rat    31 SVSSGI---------PVSATFLRPPGLFLRSTASAGRAGCVPGPGLDRALGAVGCGYPRTPKCAR 86

  Fly    44 CRNHGVVSALKGHKRYCRWRDCVCAKCTLIAERQRVMAAQVALRRQQAQEENEAREL-GLLYTSV 107
            |||||||||||||||:||||||.||||||||||||||||||||||||||||:|||.| .|||.. 
  Rat    87 CRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEESEARGLHRLLYQG- 150

  Fly   108 PGQQNGSDSATPTPHSPNHSGSGGSGSGGS-------------GQNGVFHGGIPSPPS------D 153
                         |..|....|||||...|             |.....|.|..|.|:      |
  Rat   151 -------------PSGPGAPASGGSGRTESPQVLSSPMTVAALGAGASRHPGSRSVPAFEVFQQD 202

  Fly   154 GFEASSTPNHHQQSQQQQQAHHQQHLSHPHQQSQ-RFNGNESDTDGRTRSEHLSVGFSPTRTELD 217
            ..|....|.  |.:.:..|:.|::.:|:.|.:|. ..|||.:                       
  Rat   203 FAERKQEPK--QSNCESCQSRHEEPVSNTHHRSPGSSNGNVT----------------------- 242

  Fly   218 ESPVSKRG--AALSNETDQDTGSESGSPSSPRPKVAGLFNLTASLSPARTGPPSSPESDLDVDSA 280
               :.|:|  :::|.::|:.                     |..|||..|            |.:
  Rat   243 ---MEKQGFMSSISEQSDKS---------------------TIILSPCPT------------DQS 271

  Fly   281 PDEATPENLSLKKEDSQSPPNTPAENLHLLRSFSSSHAQGFLPYHHTQFLAAAGLPAHHHPAAHS 345
            ..|.:|                        ||||||..:                         |
  Rat   272 GGEDSP------------------------RSFSSSDLE-------------------------S 287

  Fly   346 PHHQQQQQQQQQQQNHLPQHHQQQQQQQQQQQRSPIDVLMRVFPNRRRSDVEQLMQRFRGDVLQA 410
            .:..:..:........|        .....:.|.|:.:|.|:||..:||.:|.::|..:|||:||
  Rat   288 GNESEWARDYTATTASL--------STVTSRPRDPLGILTRIFPGYKRSRLEGILQFCKGDVVQA 344

  Fly   411 MECMLAGE-------DLGQTPPQ---VPPSPPFPM----------KSAFSPLVPPS-VFG----- 449
            :|.:|.|:       ||.....:   ...:..|.:          |||.|||...| .:|     
  Rat   345 IEQILNGKEHKPDCRDLAHADLENAAFQRASDFSLAGIGFGTLNNKSALSPLEAASAAYGGDSSL 409

  Fly   450 ---SPTHRYHPFMQAHAK--RFLT---APYAGTGYLPGV 480
               :|...:.|...|::.  |.|:   :||...|.:|.:
  Rat   410 YSFNPRLAFSPLRLAYSSPGRALSGFMSPYLTPGLVPAL 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dmrt99BNP_524549.1 DM 37..83 CDD:279137 43/45 (96%)
CUE_DMA_DMRTA1 378..415 CDD:270600 16/36 (44%)
Dmrta1NP_001101415.1 DM 80..126 CDD:279137 43/45 (96%)
DMA 313..348 CDD:281472 15/34 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 104 1.000 Domainoid score I6561
eggNOG 1 0.900 - - E1_KOG3815
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1573364at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12322
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X984
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.880

Return to query results.
Submit another query.