DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cap-D2 and ncapd2

DIOPT Version :9

Sequence 1:NP_651709.1 Gene:Cap-D2 / 43491 FlyBaseID:FBgn0039680 Length:1380 Species:Drosophila melanogaster
Sequence 2:XP_002941732.2 Gene:ncapd2 / 100491414 XenbaseID:XB-GENE-5854776 Length:1368 Species:Xenopus tropicalis


Alignment Length:1442 Identity:438/1442 - (30%)
Similarity:725/1442 - (50%) Gaps:179/1442 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 FQFVLPLNASDLINSSG-DQYYVKEIFGAQEIPAKLQECKRKVHLGDPFYIFEHFDLYYSII-EA 69
            |.|.:||...||:.|.| .||.|:|:...:::.|:....:.......|..|.:|||..|||: ..
 Frog     3 FHFHIPLAFRDLLKSGGIGQYVVQEVLPVRQLDAQFDAFQSSFRTEGPLCILQHFDTLYSILHHF 67

  Fly    70 RGSDGASAQNLMRSFDLLYLTVEKLFQDLQPLLTASEPMSNQQRNSYLNLTKMTLFLQVSTVKKI 134
            |..|.|..:   |..:|:.....:...:| |.:.....:|..||.::||..||..|:....|:..
 Frog    68 RSLDTAIKE---RVLELMVKVASRHASEL-PAILEDLNLSAPQRAAHLNALKMNCFILTQLVEAF 128

  Fly   135 NNSVQQAMRDQQLNVQ-----KKRAKPSEGLEQFPNWEVKRGKFLVQLFNVLQCPLEKLWSPPVA 194
            .....:|...   ||:     ||....|||.    :||.:|...|..|.::||..:.:|||..|.
 Frog   129 EAETYKASLG---NVEPSGKGKKAKSKSEGF----SWEAERESILQALTHLLQLEIRRLWSMSVV 186

  Fly   195 EEDFINLLCDPCYRTIELLP--LRMDNKHVFDTIFQILGTSIKRFNQAMTFPVRILQILRGTEHA 257
            ||:|::::...||:.:| .|  :...||...:.:..:||.::||:|..::..|:::|:|:..||.
 Frog   187 EEEFVSMVTGCCYKMME-NPNIVAAKNKSTREALGHLLGVTVKRYNHMLSASVKVIQLLQHFEHL 250

  Fly   258 AHSVAAGILLLHEEYGISSVFSILIKSIVDALRMD-SSDSSVSKHFSNFLAEFSNIAPSLIVPHL 321
            ...:...:.|...|||:..|...:::.|......| |.:||..|.|:.||.|.:...|::::|.:
 Frog   251 PSVLVHAVSLWATEYGMKPVIGEIMREIGQKCSQDLSRESSGFKAFATFLTELAERIPAIMMPSI 315

  Fly   322 EKLAEDLLDCQSHTLRNCVLQIIGDTVVSELTSEDLSEELKEVRNEFLEHLMAHILDISAHVRSK 386
            ..|. |.||.:::.:||.||.::|:.|:..|:.:.|.|..|..|::||:.|..||.|::.:||..
 Frog   316 SVLL-DYLDGENYMMRNAVLTVMGEMVLRVLSGDQLEEAEKSTRDQFLDTLQEHIHDVNTYVRCC 379

  Fly   387 VLSIWHHLKTQHAIPLNFLTRVLEEAIGRLEDKSSLVRRAAMHLIKSALESNPYSSKLSIDELRA 451
            ||.|::.:..:.|:||.....|:...:|||.|||..|.:.|:.|:.|.|.:||::.|||..:|:.
 Frog   380 VLQIYNRVVQEKALPLTRFQSVVTLVVGRLFDKSVNVCKNAIQLLASFLANNPFTCKLSSIDLKE 444

  Fly   452 KHEHEVQAMEKLNEVLEEERKQEEKL----NDEFSSLAPELLPFI----EENLTEFPDMQFDKEE 508
            ..|.|.   :||.|:.|:.:..:..:    .:|:.::.||:....    :|:..|..|...|:.|
 Frog   445 PLEKET---KKLKEMREKYQGPKPAVVISPEEEWEAMLPEVQEAFNVVQQESKEEADDDAQDEVE 506

  Fly   509 SDETLMERIIPLMREKNYKDVIVLVRK-VDFLAGNQNMSSLLKHEEHCVYVLALL-KTYHLLAAG 571
            |.:.|.|:|:.|:|:.:||:.|.|.:: ::....:...|.....||.   |||:| |.:....||
 Frog   507 SSQQLREQILLLLRKTSYKNAIRLAQEGIERFQEDPLFSEGESEEES---VLAILEKIFTGKEAG 568

  Fly   572 FKQ--------------SSEE----------MLQQIKTVQFLKDSIDFAVLMTSAFPKLHEMLMS 612
            .:|              |.||          :.:|...||:|.|:..|||.:..|...:.:|:..
 Frog   569 SEQPATTDQDDAPVKPTSDEEQPSAEVQQSDLGKQEMLVQYLSDAHHFAVKIEEAIDVISKMMYE 633

  Fly   613 KTNTDVFEAVDLFTTGYMFGIHGTESGMQRMLQLVWSSDKEKRDAVSDAYKRV-LFSTDQTGRAH 676
            ...:.|.|.::.|.|...||:.....|::|||.||||.:...|:||..||:|: |.|..::.|..
 Frog   634 TAVSVVQEVIEFFVTVSQFGVSQALLGVRRMLPLVWSKEPGVREAVLSAYRRLYLTSNGESERVK 698

  Fly   677 AIKVVQNLSKFLSEIEYGHYTALESLMTEWVLGGDIDAAVIQVLFERFTLKLEGTTSNESRLSLQ 741
            |..:|:|||..:.:...|....||.:::|::..|||...|||:|:|:||.| ..:::.|.|.::.
 Frog   699 AQALVRNLSLLMVDSSAGILQCLEEIVSEFIQKGDIHPTVIQLLWEKFTQK-SPSSALERRAAIM 762

  Fly   742 LLIMASQSKSSIVSANTAIIEDIAVGERVRRDPRIFTSCLQLLVNSIDANNTAKYYKRQNSDAEF 806
            ||.|.::.:..||.:|...:..:.:||:|:.|.::    .|.:.|.|        .|..:|....
 Frog   763 LLGMMTKGQPEIVMSNLDTLVTVGLGEQVQEDYQL----AQEVCNCI--------LKITDSQKPS 815

  Fly   807 VGKITRLFL-----DFFFHRSLYDFDALAMSVFEYF----------YRMCQAPDVIAQQLVTALL 856
            :||.|..|.     ..|.|.:......:.:|...:.          |.:.:.|:.|..:::    
 Frog   816 LGKSTEPFRLPKDHSLFVHLTEAVAGGIGLSGLHWLPFKETAVRLVYELGEEPEEICSEIL---- 876

  Fly   857 KQFNESWLVKEAAAIVPSPDKADTETVPDSQPLEIPHSQTLTPTQTQADSQSQMQGTLIPVYLVS 921
                                            |...| :.|...|||.::.:      :|.||::
 Frog   877 --------------------------------LRCSH-KVLDGHQTQDEAPT------LPAYLLT 902

  Fly   922 RLIFCIGYMTIKEMIFLDMDIYNNMKYRDELTALEERKNRNQQAGSSHNAARLTLNMSAMEVRKR 986
            .|:...|.:.:::::.|:..:.:.::.|..|...:|                      |.:|.|:
 Frog   903 HLLSLAGDVALQQVVHLERAVSSELRRRRVLKEEQE----------------------AEKVGKQ 945

  Fly   987 LSGVAAEPQQEPDDDLVGATAEDNIAEEIHGICEDMLLYNPDALLSKLAPFIIEICKRPGEFGDP 1051
            ....|.|...|.:..||||:|:|..||.|..||:..|| .....||...|.|:.||..||.:.||
 Frog   946 RKSKANESTMEEELGLVGASADDIEAELIRKICDTELL-GEQQYLSAFLPLILRICNNPGRYNDP 1009

  Fly  1052 TLQQAATLALARLMTVSSRFCESNMSFLMNILNLTKNIRIKCNTVVGLSDLTFRFPNIIEPWTGH 1116
            .|...||||||:.|.:||.||::::..|..:|..:....::.|.::.|.||:.||||:|||||.:
 Frog  1010 DLCTVATLALAKFMMISSDFCDTHLRLLFTLLEKSPLPSVRSNIMIALGDLSIRFPNLIEPWTPN 1074

  Fly  1117 FYAQLHESNTELRLTAVKMLSHLILNEMIRVKGQIADMALCIVDGNEEIRNITKQFFKEIANKSN 1181
            .||:|.:.:.|:|.||..:::||||.:|::||||:::||:.:::.::||..:.:.||.|::||.|
 Frog  1075 LYARLRDPSREVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLIESDQEIAALARNFFNELSNKGN 1139

  Fly  1182 ILYNVLPDIISRLGDINLNLDEDKYRIIMSYILGLIQKDRQIETLVEKLCLRFPVTRVERQWRDI 1246
            .:||:||||||||.|.:..::|:.::.||..:|..|.||:|.|:||||:|.||...|.||||||:
 Frog  1140 AVYNLLPDIISRLSDPDCGVEEEAFQTIMKQLLSYITKDKQTESLVEKMCHRFRTARTERQWRDL 1204

  Fly  1247 AYCLGLLTYNERAVKKLMDNMQHYRDKVQVDEVYQSFKLIISNTNKLAKPELKAVVTEFENRLNE 1311
            |:||.||.::|:.::|:.|....|.||:..|.||.||...::...:.|||||||::.|||.:||.
 Frog  1205 AHCLALLPFSEKGLRKMQDCFDCYGDKLSDDAVYNSFLSTVAKMRRGAKPELKALIDEFEQKLNR 1269

  Fly  1312 CLQVNPDTAAQG-DQESTPE--GQGNRTRAAPRT-----KKG-------GRKPAANRNNTVRGRG 1361
            |  .|......| .:|..||  .|..:::..|.|     |||       ..||.|:|    :.|.
 Frog  1270 C--HNKGLENMGVPEEPNPECDQQPPKSKRPPLTCMNSVKKGKPENEFQTPKPQASR----KSRR 1328

  Fly  1362 RRARRDSTSEES 1373
            :.|...|:.|||
 Frog  1329 KVAVTFSSDEES 1340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cap-D2NP_651709.1 Cnd1_N 77..243 CDD:289674 46/172 (27%)
COG5098 85..1269 CDD:227429 371/1241 (30%)
Cnd1 1091..1254 CDD:289487 77/162 (48%)
ncapd2XP_002941732.2 COG5098 57..1223 CDD:227429 379/1263 (30%)
HEAT repeat 1033..1062 CDD:293787 6/28 (21%)
HEAT repeat 1072..1105 CDD:293787 13/32 (41%)
HEAT repeat 1141..1169 CDD:293787 13/27 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 281 1.000 Domainoid score I1643
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6497
Inparanoid 1 1.050 591 1.000 Inparanoid score I970
OMA 1 1.010 - - QHG54099
OrthoDB 1 1.010 - - D124981at33208
OrthoFinder 1 1.000 - - FOG0004676
OrthoInspector 1 1.000 - - oto103721
Panther 1 1.100 - - LDO PTHR14222
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R215
SonicParanoid 1 1.000 - - X3869
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1313.110

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