DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dop1R2 and ser-3

DIOPT Version :10

Sequence 1:NP_001263072.1 Gene:Dop1R2 / 43484 FlyBaseID:FBgn0266137 Length:807 Species:Drosophila melanogaster
Sequence 2:NP_491954.1 Gene:ser-3 / 259744 WormBaseID:WBGene00004778 Length:610 Species:Caenorhabditis elegans


Alignment Length:684 Identity:186/684 - (27%)
Similarity:266/684 - (38%) Gaps:221/684 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 LNATTSATSATLSPAMVATGGGGTTTPEPDLSEFLEALPND------RV-GLLAFLFLFSFATVF 124
            |:..|:.|:...:|         .|...|:.| |.|...|.      |: .:::.|.:.....|.
 Worm    20 LSENTTTTTLGFTP---------ITEESPNCS-FYEWSRNPSHAQFFRIFSIISVLTVLVVVVVL 74

  Fly   125 GNSLVILAVIRERYLHTATNYFITSLAVADCLVGLVVMPFSALYEVLENTWFFGTDWCDIWRSLD 189
            ||:|||.||:..|.|.:||...|.|||:||.|||.|::|||...|||:..|.||..||.||.:||
 Worm    75 GNALVIAAVLLRRRLRSATGLLILSLALADLLVGTVILPFSIANEVLDQYWIFGETWCTIWLTLD 139

  Fly   190 VLFSTASILNLCVISLDRYWAITDPFSYPMRMTVKRAAGLIAAVWICSSAISFPAIVWWRAARDG 254
            :...||||.||..||:|||.||..|.:|||.:|..||...:|.|||.|..|..|:.....:.:|.
 Worm   140 IWMCTASIYNLVAISIDRYIAIIKPLNYPMLVTKFRARCTVAIVWIGSFLICSPSFFLASSIKDK 204

  Fly   255 EMPAYKCTFTEHLG--YLVFSSTISFYLPLLVMVFTYCRIYRAAVIQTRSLKIGTKQVLMASGEL 317
            |.|. :|| ..:.|  |:|||::.|||:|::::||.|.|||.||...|:|:..|...|..|:.:.
 Worm   205 ETPC-RCT-PANAGRVYVVFSASSSFYIPMIIVVFVYFRIYVAARAATKSIYSGMMSVTAAANKK 267

  Fly   318 Q------------------LTLRIHRG-------------GTTRDQQNQVSGGGGGGGG------ 345
            |                  ..||:|||             .|.|...|.:.....|...      
 Worm   268 QNPKSYLLNHPDVINKDSLPMLRVHRGSSVVAQITPNKPYNTCRQNGNSIDATANGTSQITAAAT 332

  Fly   346 --------------GGGGGGSLSHSHSHSHHHHHN----------HGGGTTTSTPEEPDDEPLSA 386
                          ..|..|:...:...:....|.          :|..:.::||.:..:|.|.:
 Worm   333 KARKFANDSAKTLVNRGAVGATQQAPIGARFKRHGRDSESSVDSMNGTNSYSATPHKSGNEELGS 397

  Fly   387 L-------------------------------HNNG---------------------LARHRHMG 399
            |                               :|||                     .::..|:.
 Worm   398 LIENSRSSSTDSNEKTEQLTNQTDDNFSMSNNNNNGDEKEAFDESLLSESKKKSKSLASKFNHLM 462

  Fly   400 KNFSLSRKLAKFAK----EKKAAKTLGIVMGVFIICWLPFFVVNLLSGFCIECIEHEEIVSAIVT 460
            :.....|....:.|    |.|||||:.||.|.||.|||.|.:|..|.      |:..::|.:||.
 Worm   463 RRGQKKRTAGAYEKRLSLEIKAAKTVAIVTGCFIFCWLGFALVYGLE------IKLNDVVWSIVF 521

  Fly   461 WLGWINSCMNPVIYACWSRDFRRAFVRLLCMCCPRKIRRKYQPTMRSKSQCHVAAAMVAASTSFG 525
            |||::||.:|||||..::|:||..|.|||                                    
 Worm   522 WLGYLNSALNPVIYTVFNREFRICFKRLL------------------------------------ 550

  Fly   526 YHSVNQIDRTLMXRQLSSCSTCSGGSNCGGSRSAHHQHHSSGTATPSSSQRSCTRCQSFHRHHHR 590
                                ||            ||.:|.:...|.::|..| |..:|.:. .:|
 Worm   551 --------------------TC------------HHLNHPTQKYTNNNSYNS-TAIRSTNA-VNR 581

  Fly   591 SRRRSSGMQMRGDYNSTTAVNSALAKTIVTISAP 624
            ..:.|.|       |.|...||..:...||.:.|
 Worm   582 VPQTSLG-------NYTQTQNSEKSSAAVTFNTP 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dop1R2NP_001263072.1 7tmA_Dop1R2-like 122..485 CDD:320195 150/481 (31%)
TM helix 2 143..169 CDD:320195 14/25 (56%)
TM helix 3 182..212 CDD:320195 17/29 (59%)
TM helix 4 224..246 CDD:320195 9/21 (43%)
TM helix 5 266..295 CDD:320195 15/30 (50%)
TM helix 6 297..442 CDD:320195 46/261 (18%)
TM helix 7 453..478 CDD:320195 13/24 (54%)
ser-3NP_491954.1 7tmA_Octopamine_R 80..>252 CDD:320191 82/173 (47%)
TM helix 2 93..119 CDD:320191 14/25 (56%)
TM helix 3 132..162 CDD:320191 17/29 (59%)
TM helix 4 174..197 CDD:320191 9/22 (41%)
TM helix 5 216..245 CDD:320191 15/28 (54%)
7tm_GPCRs <479..546 CDD:475119 34/72 (47%)
TM helix 6 485..507 CDD:410628 13/21 (62%)
TM helix 7 514..539 CDD:410628 13/24 (54%)

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