DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7568 and pafah1b1

DIOPT Version :10

Sequence 1:NP_001263071.1 Gene:CG7568 / 43482 FlyBaseID:FBgn0039673 Length:482 Species:Drosophila melanogaster
Sequence 2:NP_991399.1 Gene:pafah1b1 / 403097 XenbaseID:XB-GENE-1002843 Length:410 Species:Xenopus tropicalis


Alignment Length:445 Identity:104/445 - (23%)
Similarity:173/445 - (38%) Gaps:113/445 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 LLDLDSKTNIEPLADRILLQTLAEAEEE---QSPADLEKSPP---PRPVSGSVARSQNAFSALKQ 91
            :::|:||.|              ||:||   ..|...::.|.   |||                 
 Frog    65 VMELESKLN--------------EAKEEFTSGGPIGQKRDPKEWIPRP----------------- 98

  Fly    92 ALEKLQKKLREPVKKKFYLHKCHNSHILPLTNVSFDRSGERCLTGSYDRTCHVINTQTAQVEHIL 156
                         .:|:.|    :.|..|:|.|.|.......:|.|.|.|..|.:.:|...|..|
 Frog    99 -------------PEKYAL----SGHRSPVTRVIFHPVFSVMVTASEDATIKVWDYETGDFERTL 146

  Fly   157 SGHDNVVFSVGFNFPHWLVYLQSGGSGNNLTTFSIIFSDKIVTGSFDGTAKVWSATSGQSLCTFY 221
            .||.:.|..:.|:.           ||..|.:.|.           |.|.|:|.....:.:.|.:
 Frog   147 KGHTDSVQDISFDH-----------SGKLLASCSA-----------DMTIKLWDFQGFECIRTMH 189

  Fly   222 GHTAELVAAEFHPVDGKSIATASLDGSARIYDVETSHELQQLTHHGAEVIAARFNRDGQMLLTGS 286
            ||...:.:....| :|..|.:||.|.:.::::|:|.:.::..|.|...|...|.|:||.::.:.|
 Frog   190 GHDHNVSSVAIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253

  Fly   287 FDHSAAIWDVRSKSLGHQLRGHSAELSNCVW----NFSGSLIATGSLDNTARIWDTRKLDQELYL 347
            .|.:..:|.|.:|....:||.|...:....|    ::|....||||        :|:|..:    
 Frog   254 NDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSTISDATGS--------ETKKSGK---- 306

  Fly   348 AARHSDEVLDVSFDAAGQLLATCSSDCTARVWRLEGSSELEM-LSLMAGHSDEVSKVCFSPSGCM 411
                           .|..|.:.|.|.|.::|.:    .:.| |..:.||.:.|..|.|.|.|..
 Frog   307 ---------------PGPFLLSGSRDKTIKMWDI----SIGMCLMTLVGHDNWVRGVQFHPGGKF 352

  Fly   412 LLTASADNTARLWLTESGQCSQVLAGHEGEVFSCAYSYAGDAILTASKDNSCRFW 466
            :|:.:.|.|.|:|..::.:|.:.|..||..|.|..:......::|.|.|.:.:.|
 Frog   353 ILSCADDKTIRIWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7568NP_001263071.1 WD40 117..467 CDD:441893 89/355 (25%)
WD40 repeat 122..158 CDD:293791 11/35 (31%)
WD40 repeat 189..222 CDD:293791 6/32 (19%)
WD40 repeat 228..265 CDD:293791 8/36 (22%)
WD40 repeat 270..306 CDD:293791 10/35 (29%)
WD40 repeat 314..348 CDD:293791 8/37 (22%)
WD40 repeat 355..393 CDD:293791 8/38 (21%)
WD40 repeat 400..436 CDD:293791 11/35 (31%)
WD40 repeat 442..466 CDD:293791 5/23 (22%)
pafah1b1NP_991399.1 LisH 10..34 CDD:462501
WD40 104..408 CDD:238121 90/362 (25%)
WD 1 106..147 12/40 (30%)
WD40 repeat 111..148 CDD:293791 11/36 (31%)
WD 2 148..187 12/60 (20%)
WD40 repeat 154..190 CDD:293791 10/57 (18%)
WD 3 190..229 10/39 (26%)
WD40 repeat 195..231 CDD:293791 8/36 (22%)
WD 4 232..271 11/38 (29%)
WD40 repeat 238..273 CDD:293791 9/34 (26%)
WD 5 274..333 17/89 (19%)
WD40 repeat 279..335 CDD:293791 16/86 (19%)
WD 6 336..377 13/40 (33%)
WD40 repeat 341..377 CDD:293791 11/35 (31%)
WD 7 379..410 8/29 (28%)
WD40 repeat 383..407 CDD:293791 5/23 (22%)
Blue background indicates that the domain is not in the aligned region.

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