DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alph and ppm1db

DIOPT Version :9

Sequence 1:NP_651701.1 Gene:alph / 43481 FlyBaseID:FBgn0086361 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_001007341.1 Gene:ppm1db / 492468 ZFINID:ZDB-GENE-041114-27 Length:534 Species:Danio rerio


Alignment Length:430 Identity:112/430 - (26%)
Similarity:173/430 - (40%) Gaps:124/430 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 WRSEME-------DAYYARAGLGDALPDWSFFAVFDGHAGCKVSEHCAKHLLESIISTEEFIGGD 89
            ||:.:.       |....:....|:....:||||||||.|.:.:.....||.:.:.....|...|
Zfish    74 WRNPLSTEEADGTDEPGTQPAAADSRRSVAFFAVFDGHGGREAAMFARDHLWDFLKKQRGFWSKD 138

  Fly    90 HVK---GIRTGFLRIDEVM-RELPEFTRE---SEKCGGTTAVCAFVGLTQVYIANCGDSRAVLCR 147
            :.|   .||.||:.....| ::|||:.:.   .....||||....:....:::|:.|||..||..
Zfish   139 YRKVCSAIRKGFIACHHAMWKKLPEWPKTLTGLPSTSGTTASVVVIRGDHMFVAHVGDSSVVLGV 203

  Fly   148 QGVP-------VFATQDHKPILPEEKERIYNAGGSVM----IKRV---------NGT-------- 184
            :..|       |..||||||.||:||:||...||||:    :.||         ||.        
Zfish   204 REDPSDKVIKAVEVTQDHKPELPKEKQRIEGLGGSVVKKSGVNRVVWKRPRLSHNGPVRRSTPID 268

  Fly   185 ----LAVSRALGD---YDFKNVKEKGQCEQLVSPEPE---IFCQSRQDSDEFLVLACDGIWDVMS 239
                |||:|||||   |||.:      .|.:|||||:   :....|:  ..::::...|:|:::.
Zfish   269 QIPFLAVARALGDLWSYDFYS------GEFVVSPEPDTSVVTLDPRR--HRYIIVGSGGLWNMVP 325

  Fly   240 NEDVCSFIHSRMRVTSNL-VSIANQVVDTCLHKGSR-----DNMSIIIIAFPGAPKP-----TEE 293
            .::..:...|.....:.. :|:|.::....|.:..:     ||.|:|:||.|...||     .:|
Zfish   326 PQEAVTVCQSHDEAVAPFGMSVARRLGCHALMRWRQRMLRADNTSVIVIALPEPGKPHLPMHRDE 390

  Fly   294 AI----EAEH-------RLEKQIEKITRDEIESSKITDYVDLLKCLQNRDDIEG----------- 336
            .|    |..|       |....:.|....::.|:.    .:.|..|:.|:.:.|           
Zfish   391 VILSLAEGPHCDPATGSRSNTPLIKTPDPDLSSAS----SESLPALERRNGLSGVSLCAEAPLEE 451

  Fly   337 -LP-------------PGGGLQSKYHVIERTFKQEFPDRP 362
             ||             |.||        :||     ||.|
Zfish   452 NLPYIELADKTDLTVCPSGG--------KRT-----PDTP 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphNP_651701.1 PP2Cc 24..284 CDD:238083 87/309 (28%)
PP2C_C 278..352 CDD:285117 23/114 (20%)
ppm1dbNP_001007341.1 PP2Cc 101..376 CDD:238083 83/282 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0631
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.