DRSC/TRiP Functional Genomics Resources

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Protein Alignment alph and fem-2

DIOPT Version :10

Sequence 1:NP_651701.1 Gene:alph / 43481 FlyBaseID:FBgn0086361 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_497224.1 Gene:fem-2 / 175217 WormBaseID:WBGene00001412 Length:449 Species:Caenorhabditis elegans


Alignment Length:315 Identity:90/315 - (28%)
Similarity:143/315 - (45%) Gaps:58/315 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 MQGWRSEMEDAY--YARAGLGDALPD-WSFFAVFDGHAGCKVSEHCAKHLLESIISTEEFIG-GD 89
            ::|.|.:.||.:  |......|...| .|..||||||.|.:.|::.|.||.|:.:...:... .|
 Worm   168 LKGQRHKQEDRFLAYPNGQYMDRGEDPISVLAVFDGHGGHECSQYAAGHLWETWLEVRKSRDPSD 232

  Fly    90 HVKG-IRTGFLRIDEVMRELPEFTRESEKC--GGTTAVCAFVGLTQ--VYIANCGDSRAVLC--- 146
            .::. :|.....:||.|.     .|..::|  ||:||||..:.:.|  :.:|..|||...:.   
 Worm   233 SLEDQLRKSLELLDERMT-----VRSVKECWKGGSTAVCCAIDMDQKLMALAWLGDSPGYVMSNI 292

  Fly   147 --RQGVPVFATQDHKPILPEEKERIYNAGGSVMI----KRVNGTLAVSRALGDYDFKNVKEKGQC 205
              ||     .|:.|.|....|..|:..|||.:.:    .||||.|.::|||||...:        
 Worm   293 EFRQ-----LTRGHSPSDEREARRVEEAGGQLFVIGGELRVNGVLNLTRALGDVPGR-------- 344

  Fly   206 EQLVSPEPEIFCQSRQDSDEFLV-LACDGIWDVMSNEDVCSFIHSRMR--VTSNLVSIANQVVDT 267
             .::|.|||. ||...:|.::|| ||||||.||.:..|:...:.:...  ...:...::..:...
 Worm   345 -PMISNEPET-CQVPIESSDYLVLLACDGISDVFNERDLYQLVEAFANDYPVEDYAELSRFICTK 407

  Fly   268 CLHKGSRDNMSIIIIAFPGAPKPTEEAIEAEHRLEKQIEKITRDEI--ESSKITD 320
            .:..||.||:|::|    |..:|.::           :.|:.:.|.  |.|.:||
 Worm   408 AIEAGSADNVSVVI----GFLRPPQD-----------VWKLMKHESDDEDSDVTD 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alphNP_651701.1 PP2Cc 24..284 CDD:238083 82/275 (30%)
PP2C_C 278..355 CDD:429684 10/45 (22%)
fem-2NP_497224.1 PP2C 161..417 CDD:395385 79/268 (29%)

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