Protein Alignment Trc8 and Hrd1B

DIOPT Version :9

• Sequence 1: NP_996303.1
• Gene: Trc8 / 43476
• FlyBaseID: FBgn0039668
• Length: 809
• Species: Drosophila melanogaster
• Sequence 2: NP_849843.3
• Gene: Hrd1B / 842812
• AraportID: AT1G65040
• Length: 460
• Species: Arabidopsis thaliana
• Alignment Length: 416
• Identity: 97/416 - (23%)
• Similarity: 162/416 - (38%)
• Gaps: 134/416 - (32%)

  Fly   381 YLLTYDDEEKSLGTVSAVLFYILALQTGLTSLSPDKRFIRLCRNLCLLMTALLHFLHNIVSPILM 445
            :.:|...::.|:|.:|.|:  .|.|..||..:: .||               :.::....|..|:
plant    90 FAITIFRQDFSVGFISLVV--TLLLIKGLHWMA-QKR---------------VEYIETTPSVTLL 136

  Fly   446 SLSAARNPSRKRHVRALSVCAFLVVLSVSLLYHLWSQ------QSISTW------LLAVTAFSVE 498
            |           |||.:|...||::|...|.|....|      .|:|.:      :||.|  :|.
plant   137 S-----------HVRIVSFMVFLLILDCLLTYSSIQQLIQSRKASMSVFFTFEYMILATT--TVS 188

  Fly   499 VVVKVLVSLATYTLFLLDARRQFFWEKLDDYLYYVRAFGN----SVEFCFGILLFINGAWIL--- 556
            ::||       |..::.|..::..||....|.:|:....:    |:..||.:::|:|....|
plant   189 IIVK-------YAFYVTDMLKEGQWEGKPVYTFYLELVRDLLHLSMYLCFFLMIFMNYGLPLHLI 246

  Fly   557 --IFESAQNATGGGIRAIMMCIHAYFNIWCEARAGWSVFMKRRSAVHKIS-ALPEATPAQLQAFD 618
              ::|:.:|                |.|..      :.:::.|.....:: ..|:|||.:|.:.|
plant   247 RELYETFRN----------------FKIRV------TDYLRYRKITSNMNDRFPDATPEELSSND 289

  Fly   619 DVCAICYQEMYSAKITRCRHFFHGVCLRKWLYVQDRCPLCHEIMMYTDKADENAPEAEPAPAAQA 683
            ..|.||.:||.|||...|.|.||..|||.||..|:.||.|..:
plant   290 ATCIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTCRAL---------------------- 332

  Fly   684 EQPMRIYPRDDANNAAAQRRSPERAPVEASEQAPATSSSSAAATIGAEAVSAIVESAAAVGEARS 748
                 :.|.::|.:.|:..|.|.:   |:.:|...||||.                    |:..|
plant   333 -----VVPAENATSTASGNRGPHQ---ESLQQGTGTSSSD--------------------GQGSS 369

  Fly   749 LVSVASSSSATH--RISASGSSDSSY 772
            :.:.||.:.:.|  |..|:.|:.|.|
plant   370 VSAAASENMSRHEARFQAAASAASIY 395

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Trc8	NP_996303.1	TRC8_N	122..590	CDD:290425	48/229 (21%)
		zf-rbx1	<618..659	CDD:289448	21/40 (53%)
		zf-RING_2	619..659	CDD:290367	20/39 (51%)
Hrd1B	NP_849843.3	HRD1	9..386	CDD:227568	93/405 (23%)
		zf-RING_2	291..330	CDD:290367	20/38 (53%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5243
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D897451at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	4	3.780