Protein Alignment Trc8 and Hrd1A

DIOPT Version :9

• Sequence 1: NP_996303.1
• Gene: Trc8 / 43476
• FlyBaseID: FBgn0039668
• Length: 809
• Species: Drosophila melanogaster
• Sequence 2: NP_188230.1
• Gene: Hrd1A / 820854
• AraportID: AT3G16090
• Length: 492
• Species: Arabidopsis thaliana
• Alignment Length: 501
• Identity: 107/501 - (21%)
• Similarity: 184/501 - (36%)
• Gaps: 137/501 - (27%)

  Fly   339 PLDLMTATQKLLVDGCETMTAVLGMTGVISMFCHYIGRGFQWYLLTY-------DDE-----EKS 391
            |..:..:|.|:      ::..:|.|..|:.:..        |:|:.:       :.|     |::
plant    31 PATVYLSTSKI------SLVLLLNMCLVLMLSL--------WHLVKFVFLGSLREAEVERLNEQA 81

  Fly   392 LGTVSAVLFYILALQTGLTSLSPDKRFIRLCRNLCLLMTALLHFLHNIVSPILMSLSAARNPSRK 456
            ...:..:||.|...:...:|     .|:.|...|.|:..     ||.:....:..:....:.|:.
plant    82 WRELMEILFAITIFRQDFSS-----GFLPLVVTLLLIKA-----LHWLAQKRVEYIETTPSVSKL 136

  Fly   457 RHVRALSVCAFLVVLSVSLLY----HLWSQQSISTWLLAVTAFSVEVVVKVLVSLA---TYTLFL 514
            .|.|.:|...||:::....:|    ||...:..|..|.    ||.|.::....::|   .|..::
plant   137 SHFRIVSFMGFLLLVDSLFMYSSIRHLIQSRQASVSLF----FSFEYMILATTTVAIFVKYVFYV 197

  Fly   515 LDARRQFFWEKLDDYLYYVRAFGN----SVEFCFGILLFINGAWIL-----IFESAQNATGGGIR 570
            .|......|||...|.:|:....:    |:..||..::|:|....|     ::|:.:|
plant   198 TDMLMDGQWEKKPVYTFYLELIRDLLHLSMYICFFFVIFMNYGVPLHLLRELYETFRN------- 255

  Fly   571 AIMMCIHAYFNIWCEARAGWSVFMKRRSAVHKIS-ALPEATPAQLQAFDDVCAICYQEMYSAKIT 634
                     |.|..      |.:::.|.....:: ..|:|||.:|.|.|..|.||.:||.:||..
plant   256 ---------FQIRV------SDYLRYRKITSNMNDRFPDATPEELTASDATCIICREEMTNAKKL 305

  Fly   635 RCRHFFHGVCLRKWLYVQDRCPLCHEIMMYTDKADENAPEAEPAPAAQAEQPMRIYPRDDANNAA 699
            .|.|.||..|||.||..|..||.|..:::    ..|||..|.|.
plant   306 ICGHLFHVHCLRSWLERQQTCPTCRALVV----PPENATSAAPG--------------------- 345

  Fly   700 AQRRSPERAPVEASEQAPATSSSSAAATIGAEAVSAIVESAAAVGEARSLVSVASSSSATH--RI 762
                  :|...:.|:|..::|.:..:                   |..|...|:::|.:.|  |:
plant   346 ------QRELHQGSQQGTSSSGNQGS-------------------EISSSAGVSNNSLSRHHARL 385

  Fly   763 SASGSSDSSYMTASAQSPPPTATSAAAVATAAASNTTHMFRMSQDQ 808
            .|:.|:.|.|..:...      .||..||.::....|.......||
plant   386 QAAASAASVYGKSMVY------PSANTVAWSSGVPGTEQVSTEPDQ 425

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Trc8	NP_996303.1	TRC8_N	122..590	CDD:290425	52/278 (19%)
		zf-rbx1	<618..659	CDD:289448	20/40 (50%)
		zf-RING_2	619..659	CDD:290367	19/39 (49%)
Hrd1A	NP_188230.1	HRD1	3..386	CDD:227568	96/454 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5243
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D897451at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	4	3.780