DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trc8 and CG13605

DIOPT Version :9

Sequence 1:NP_996303.1 Gene:Trc8 / 43476 FlyBaseID:FBgn0039668 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_651214.2 Gene:CG13605 / 42858 FlyBaseID:FBgn0039150 Length:669 Species:Drosophila melanogaster


Alignment Length:571 Identity:114/571 - (19%)
Similarity:201/571 - (35%) Gaps:154/571 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 TSLGLTFLSYWSNVSALALTERSPSMVEDLMSLNTTRLLDSGGVVMSLAPHLMAQWFMGMLFAYI 220
            |:.|:..:.:| .|:           :.|:.||:|.   .|...:.|...|...::......|..
  Fly   163 TAAGVRQMGFW-RVN-----------LNDVFSLSTA---SSTEALRSFISHSNFRYPPATTAAPA 212

  Fly   221 HLGPRFEHVQRSMPIIFASPILLAM----LPLPAKVVQHLPVVAV----FTPIILTKITLMQSAM 277
            ..||     |.:...:..|.|||..    :|.|...:::..|.||    ....:...|:|.:..|
  Fly   213 APGP-----QPAANPVDNSHILLGQQQPSMPEPVSPLRYGRVSAVSGASSAGAMGRSISLREGEM 272

  Fly   278 EASRTVYNGYQYAMNFVSNFGLSALIE---NEWQRL-----NVPNVLRVFWTIRLIQGGYALATT 334
            ..:.::..|...|.....|...:|..|   ||.|.|     ||.|            ||   ...
  Fly   273 RHNHSLNGGRHNASAIGLNSNPAAFDEREANESQDLDESDGNVEN------------GG---GGG 322

  Fly   335 ESDEPLDLMTATQKLLVDGCETMTAVLGMTGVISMFCHYIGRGFQWYLLTYDDEEKSLGTVSAVL 399
            ...||.:.....:.|:.|..        :..::|.|..|:...|..:.....|.  .||.|.   
  Fly   323 NPPEPAENNPEDEHLISDDM--------VVQILSHFVRYLPLIFILFFKFLHDH--LLGIVD--- 374

  Fly   400 FYILALQTGLTSLSPDKR--FIRLC-RNLCLLMTALLHFLHNIVSPILMSLSAAR--------NP 453
              :|.|||.:.:::...|  ..||. :|..:::...  ||..:|..:.:.|:.:.        .|
  Fly   375 --LLVLQTVMYNVNRSVRNQVARLAQKNYAVMVRDT--FLVAVVVTVRLFLATSPPDPFGLIVPP 435

  Fly   454 SRKRHVRALSVCAFLVVLSVSLLYHLWSQ--------QSISTWLLAVTAFSVEVV---------- 500
            |||        ..|:.|  .:|.:|..|:        :.|.|.:...|..|:.|:          
  Fly   436 SRK--------SVFIEV--TALPFHTSSEGDSPTTSSEPIKTNMYKDTYKSLNVIPLGMLLYYIA 490

  Fly   501 ------------VKVLVSLATYTLFLLDARRQFFWEKLDDYL-YYVRAFGNSVEFCFGILLFING 552
                        ||:::::..:.|..|..|.:.:  .|.:|: .:.||.....::    |||:..
  Fly   491 VSDLIIKLLTMLVKLIITMLPHHLMRLKVRARLY--VLVEYISQFYRAMTPITQW----LLFLYE 549

  Fly   553 AWILIFESAQNATGGGIRAIMMCIHAYFNIWCEARAGWSVF--MKRRSAVHK--------ISALP 607
            ::     |......||:.:.|.             .|..:|  ::|..::.|        |.:..
  Fly   550 SY-----SGLEVVSGGLFSAMY-------------LGAKIFELVERGKSLKKAIVTFRKNIDSER 596

  Fly   608 EATPAQLQAFDDVCAICYQEMYSAKITRCRHFFHGVCLRKWLYVQDRCPLC 658
            ..|..:|.|...:|.||:....:..:..|.|.|...|::.|...:..||:|
  Fly   597 PPTKDELDAAGALCPICHDAFNTPTVLECGHIFCDECVQTWFKREQTCPMC 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trc8NP_996303.1 TRC8_N 122..590 CDD:290425 95/491 (19%)
zf-rbx1 <618..659 CDD:289448 11/41 (27%)
zf-RING_2 619..659 CDD:290367 11/40 (28%)
CG13605NP_651214.2 RING 610..651 CDD:238093 11/38 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5243
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D897451at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.820

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