DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trc8 and rnf145b

DIOPT Version :9

Sequence 1:NP_996303.1 Gene:Trc8 / 43476 FlyBaseID:FBgn0039668 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_956057.1 Gene:rnf145b / 327056 ZFINID:ZDB-GENE-030131-5264 Length:685 Species:Danio rerio


Alignment Length:816 Identity:192/816 - (23%)
Similarity:343/816 - (42%) Gaps:190/816 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSVRTKVLGLVDVMMRVPPVMVIDEILKMDMGMQSWLYPDKDKASGALATPTEAPAVPSGQDPFT 65
            |:::.::..:::|.:|:|.:|:::.:.:.|:                                  
Zfish     1 MAMKARLESVLNVGLRIPSIMLLEVLYRWDV---------------------------------- 31

  Fly    66 SIKELFSHMTTSAQSVLEQSIEKASEAAKTHGMLSSGFNSLMNELSKDQTLADVLSTTTVKFVLC 130
                          |...|.|::               :||.|.        .|.....:...|.
Zfish    32 --------------SSFFQKIQR---------------SSLNNN--------PVFQYKYIALYLH 59

  Fly   131 VFAFLSAACIFMLWTRHLVMVYMFLTSLGLTFLSYWSN----VSALALTERSPSMVEDLMSLN-- 189
            ...::.:..:..|..:|||.:|:::.:..|.|..:..:    ...|......|..:|.| |:|  
Zfish    60 YVGYILSLVLLTLPRQHLVQLYLYVLTALLLFAGHQLSRDYVRGELDSGYEGPLYLEPL-SMNRF 123

  Fly   190 TTRLLDSGGVVMSLAPHLMAQWFMGMLFAYIHLGPRFEHVQRSMPIIFASPILLAMLPLPAKVVQ 254
            ||.|:  |.||:......:.|.....||: .||                       |||.|:   
Zfish   124 TTALI--GQVVVCTLCSCVMQTRQIWLFS-AHL-----------------------LPLVAR--- 159

  Fly   255 HLPVVAVFTPIILTKITLMQSAME-----ASRTV--YN----GYQYAMNFVSNFGLSALIENEWQ 308
             |.:|.:.|.:.:.:..::.:.:|     ||..:  ||    .|:..:..|..:||.||..:.|.
Zfish   160 -LCLVPLETIVFINRFAMIFTGLEVLYFIASNLLVPYNLAKTAYRELVQVVEVYGLLALGMSLWN 223

  Fly   309 RLNVPNVLRVFWTIRLIQGGYALATTESDEPLDLMTATQKLL-------VDGCETMTAVLGMT-- 364
            :|.:|.:...||.:......|...:|....|     :.::||       .:.|.|..::||:.  
Zfish   224 QLVLPVLFMCFWLVLFALQIYTYFSTRDQPP-----SRERLLFLFLTSIAECCSTPYSLLGLVFT 283

  Fly   365 ------GVISMFCHYIGRGFQWYLLTYDDEEKSLGTVSAVLFYILALQTGLTSLSPDKRFIRLCR 423
                  ||::: |.:..:|::.::   :|.....|....:...|||:||||..|....|...|..
Zfish   284 VSFVALGVLTL-CKFYLQGYRAFM---NDNAMHRGMTEGITLLILAVQTGLIELQVIHRAFLLSI 344

  Fly   424 NLCLLMTALLHFLHNIVSPILMSLSAARNPSRKRHVRALSVCAFLVVLSVSLLYHLWSQQSISTW 488
            .|.:::.::|..:..|..||:::|.|:|:.|..:|.||:|:|.||:|....:.|.:.....:..|
Zfish   345 ILFIVVASILQSMLEIADPIVLALGASRDKSLWKHFRAVSLCLFLLVFPAYMAYMICQFFRMDFW 409

  Fly   489 LLAVTAFSVEVVVKVLVSLATYTLFLLDARRQFFWEKLDDYLYYVRAFGNSVEF-------CFGI 546
            ||.:.:.|:...::||.:|..|.||:::..|:...|.:|:.:|||......:||       .:|:
Zfish   410 LLIIISSSILTSLQVLGTLLIYVLFMVEEFRKAPVENMDEVIYYVNGTYRLLEFLVAVCVVAYGV 474

  Fly   547 LLFINGAWILIFESAQNATGGGIRAIMMCIHAYFNIWCEARAGWSVFMKRRSAVHKISALPEATP 611
            ...:.|.|.:            :.:.::.:|:|:|:|..|:.||..|:.||.|||||.::|.|:.
Zfish   475 SETLFGEWTV------------MGSTIILVHSYYNVWLRAQLGWQSFLLRRDAVHKIQSMPTAST 527

  Fly   612 AQLQAFDDVCAICYQEMYSAKITRCRHFFHGVCLRKWLYVQDRCPLCHEIMMYTDKADENAPEAE 676
            .|||..:|:|:||:|:|.||.||.|.||||..||:||||||:.|||||..:     ..:..|.:.
Zfish   528 LQLQQHNDICSICFQDMKSAVITPCSHFFHAACLKKWLYVQETCPLCHGQL-----KSQLQPTSS 587

  Fly   677 PAPAAQAEQPMRIYPRDDANNAAAQRRSPE-----RAPVEASEQAPATSSSSAAATIGAEAVSAI 736
            |....|........||:    ...::|.|:     ...:.|.|.     .:||...:|.:.:...
Zfish   588 PGTPTQGTPAANQNPRE----VEQEQRQPQVELNTEEGIRAEEM-----KTSAEQKLGMDLLPGS 643

  Fly   737 VESAAAVGEARSLVSVASSSSATHRISASGSSDSSY 772
            :.:     :.:....||..|:.|    ||......|
Zfish   644 LNT-----QPKECDLVAEGSAGT----ASNLKGDDY 670

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trc8NP_996303.1 TRC8_N 122..590 CDD:290425 117/506 (23%)
zf-rbx1 <618..659 CDD:289448 26/40 (65%)
zf-RING_2 619..659 CDD:290367 26/39 (67%)
rnf145bNP_956057.1 TRC8_N 8..506 CDD:290425 129/620 (21%)
zf-RING_2 535..575 CDD:290367 26/39 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 582..685 19/107 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 72 1.000 Domainoid score I9282
eggNOG 1 0.900 - - E1_COG5243
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D302551at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.820

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