DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FipoQ and fbxl4

DIOPT Version :9

Sequence 1:NP_733291.1 Gene:FipoQ / 43475 FlyBaseID:FBgn0039667 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_001007316.1 Gene:fbxl4 / 492349 ZFINID:ZDB-GENE-041114-187 Length:607 Species:Danio rerio


Alignment Length:360 Identity:83/360 - (23%)
Similarity:153/360 - (42%) Gaps:53/360 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 RSPFADTTIEKLPDKVLLHIFSYLSHREICRLARICRRWRQIAYDTRLWKNVSLRP------EVS 84
            |...|:...::||.:::..|.|:|...::||||:.|:.:.:...|...:..:||:|      :.|
Zfish   258 RQSLANGYFDRLPYELIQLIVSHLPVPDLCRLAQSCKLFHKHCCDPLQYIQLSLQPYWARLTDAS 322

  Fly    85 GLHVGSLEMLLQLISVRF-------------------GPTLRYIELP-IELITHTVLHELSAKCP 129
            ..|:.|...|||.:::.:                   |.:|..:|:. ...:|...|..::..||
Zfish   323 LCHLQSRCTLLQRLNLSWTGNRGAVTPAGFCSFMKACGASLVCLEVSCCHFLTEACLEVITQTCP 387

  Fly   130 NLTHMLLDFSTAMQLHDFSEMQAFPTKLRYMCVCLSEVIFMEGFMRKIYNFINGLEVLHLIGTYE 194
            .|..:.|.....:|...|:.: |..|.||.:.:..::|  .:..:..|..|...|..|:| |:..
Zfish   388 CLQELNLASCDRLQPQAFNHI-AKLTHLRRLVLYRTKV--EQSAILSILTFCPELRHLNL-GSCV 448

  Fly   195 KCEEEEEEIYEVINVHKLKSATPNLRVINLYGINFIDDSHIDAFSSNCIQLECLAVNFCNKVTGS 259
            ..|:     |:|: |..|.:...:||.::|:....:.:..:....|.|..||.|.:.:|:.:..|
Zfish   449 MIED-----YDVV-VSMLSARCRSLRSLDLWRCRNLSERGLAELVSGCRLLEELDLGWCSTLQSS 507

  Fly   260 T--LKTLIQRSKRLTCLLMNGTSLKSEFVMQAEWDKC-ALQELDITATDL-STECLVDMLSRIPS 320
            :  .:.|.:...||..|.:.......:..::.....| |||.|||..|.: |:..|..:|...|.
Zfish   508 SACFQHLARSLPRLRKLFLTANRTVCDADLEELAANCSALQHLDILGTRMVSSASLRKLLQCCPR 572

  Fly   321 LKFLSAG-----------QINGF--NDSVLKQWME 342
            ||.|...           ::||.  |.|:.|.:.:
Zfish   573 LKLLDVSFCSQIDSRFVQELNGLFPNVSIKKSFTQ 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FipoQNP_733291.1 F-box-like 34..80 CDD:289689 12/45 (27%)
leucine-rich repeat 131..156 CDD:275381 5/24 (21%)
leucine-rich repeat 157..175 CDD:275381 3/17 (18%)
leucine-rich repeat 219..244 CDD:275381 5/24 (21%)
leucine-rich repeat 245..270 CDD:275381 6/26 (23%)
leucine-rich repeat 271..295 CDD:275381 3/24 (13%)
leucine-rich repeat 296..320 CDD:275381 9/24 (38%)
leucine-rich repeat 321..348 CDD:275381 8/35 (23%)
leucine-rich repeat 349..375 CDD:275381
leucine-rich repeat 376..403 CDD:275381
leucine-rich repeat 405..432 CDD:275381
fbxl4NP_001007316.1 F-box-like 266..312 CDD:289689 12/45 (27%)
leucine-rich repeat 281..303 CDD:275381 6/21 (29%)
leucine-rich repeat 304..326 CDD:275381 4/21 (19%)
AMN1 <317..436 CDD:187754 23/121 (19%)
leucine-rich repeat 333..362 CDD:275381 3/28 (11%)
leucine-rich repeat 363..388 CDD:275381 5/24 (21%)
leucine-rich repeat 389..413 CDD:275381 5/24 (21%)
AMN1 414..591 CDD:187754 43/185 (23%)
leucine-rich repeat 414..438 CDD:275381 5/25 (20%)
leucine-rich repeat 439..466 CDD:275381 9/33 (27%)
leucine-rich repeat 467..492 CDD:275381 5/24 (21%)
leucine-rich repeat 493..520 CDD:275381 6/26 (23%)
leucine-rich repeat 521..545 CDD:275381 2/23 (9%)
leucine-rich repeat 547..572 CDD:275381 9/24 (38%)
leucine-rich repeat 573..598 CDD:275381 5/24 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1947
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.