DRSC/TRiP Functional Genomics Resources

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Protein Alignment FipoQ and Skp2

DIOPT Version :9

Sequence 1:NP_733291.1 Gene:FipoQ / 43475 FlyBaseID:FBgn0039667 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_730815.2 Gene:Skp2 / 40548 FlyBaseID:FBgn0037236 Length:559 Species:Drosophila melanogaster


Alignment Length:355 Identity:85/355 - (23%)
Similarity:146/355 - (41%) Gaps:81/355 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 EKLPDKVLLHIFSYLSHREICRLARICRRWRQIAYDTRLWKNVSLRPEVSGLHV---GSLEMLLQ 96
            |:|.|::||.||.:|..:.:.|:|.:|||:.:.:.|..||..:.|     ||..   |:||.:::
  Fly   240 ERLSDEILLDIFKWLPKKTLLRMATVCRRFNRCSRDETLWTRLDL-----GLRTIRPGALEQIVR 299

  Fly    97 --LISVRFGPT-----------------LRYIELPIELITHTVLHELSAKCP-----NLTHMLLD 137
              ::.:|...|                 |:|::|.:..||.:.|..|.:.|.     :|.::.||
  Fly   300 RGVLVIRLAQTSIQEPAFAPYTEVFRTRLQYLDLSMASITRSSLLTLLSHCRQLKKISLENIELD 364

  Fly   138 FSTAMQLHDFSEMQAFPTKLRYMCVCLSEVIFMEGFMRKIYNFINGLEVLHLIGTYEKCEEEEEE 202
            .....::.....::|....:.......|..:.||.        :..|..|::..|     :...:
  Fly   365 DDICAEIAKNEALEAVNLTMASGLTSNSVRLMMES--------LTSLSSLNISWT-----DLSAD 416

  Fly   203 IYEVINVHKLKSATPNLRVINLYGI-NFIDDSHIDAFSSNCIQLECLAVNFCNKVTGSTLKTLIQ 266
            ....:..|    .:|||..:|:.|. ..:.|||:......|.||..|.::.||.:| .|:.|.|.
  Fly   417 AVTALVTH----ISPNLIRLNIAGCRRVLFDSHVATLQKRCPQLLELDLSDCNSLT-PTVITAIM 476

  Fly   267 RSKRL------TCLLMNGT---SLKSEFVMQAEWDKCALQELDI--TATDLSTECLVDMLSRIPS 320
            :.|.|      .|.|:..|   .|||         ..:|..|||  ..:|.:.|.|...|.::..
  Fly   477 KFKMLEYLSVSRCYLIPATKFIELKS---------MPSLTYLDIFGMLSDTAMEVLEKQLPKMGI 532

  Fly   321 LKFLSAGQINGFNDSVLKQWMESGTTRSLI 350
            .||:        :.||.:..:  ||.|:.|
  Fly   533 NKFI--------HSSVSRPTV--GTRRTSI 552

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FipoQNP_733291.1 F-box-like 34..80 CDD:289689 16/44 (36%)
leucine-rich repeat 131..156 CDD:275381 4/24 (17%)
leucine-rich repeat 157..175 CDD:275381 3/17 (18%)
leucine-rich repeat 219..244 CDD:275381 7/25 (28%)
leucine-rich repeat 245..270 CDD:275381 8/24 (33%)
leucine-rich repeat 271..295 CDD:275381 7/32 (22%)
leucine-rich repeat 296..320 CDD:275381 8/25 (32%)
leucine-rich repeat 321..348 CDD:275381 6/26 (23%)
leucine-rich repeat 349..375 CDD:275381 1/2 (50%)
leucine-rich repeat 376..403 CDD:275381
leucine-rich repeat 405..432 CDD:275381
Skp2NP_730815.2 F-box-like 239..284 CDD:289689 16/43 (37%)
leucine-rich repeat 302..327 CDD:275381 2/24 (8%)
AMN1 309..480 CDD:187754 38/188 (20%)
leucine-rich repeat 328..352 CDD:275381 8/23 (35%)
leucine-rich repeat 353..376 CDD:275381 3/22 (14%)
leucine-rich repeat 377..402 CDD:275381 4/32 (13%)
leucine-rich repeat 403..428 CDD:275381 4/33 (12%)
leucine-rich repeat 429..455 CDD:275381 7/25 (28%)
leucine-rich repeat 456..480 CDD:275381 8/24 (33%)
leucine-rich repeat 481..500 CDD:275381 4/18 (22%)
leucine-rich repeat 506..529 CDD:275381 8/22 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45457988
Domainoid 1 1.000 42 1.000 Domainoid score I3206
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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