DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp99A and ptprfb

DIOPT Version :9

Sequence 1:NP_651691.4 Gene:Ptp99A / 43469 FlyBaseID:FBgn0004369 Length:1397 Species:Drosophila melanogaster
Sequence 2:XP_009296732.1 Gene:ptprfb / 799867 ZFINID:ZDB-GENE-060503-530 Length:1927 Species:Danio rerio


Alignment Length:1346 Identity:384/1346 - (28%)
Similarity:596/1346 - (44%) Gaps:275/1346 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 ATQAGRIFDVTNLDYVKVNAEAGKNVTIPCPGVNEHSLV--------DTLVWKTASTTIAQFANR 87
            |::.|.|...| :.|..||.|..:...:|..|.:..|.|        :..||..|.|.:.     
Zfish   647 ASRHGAIVRYT-VSYQAVNGEDTERHEVPDIGADASSCVLEGLEKWTEYQVWVRAHTDVG----- 705

  Fly    88 IPLLHSPRIQLLSDNFGLQFSPSLASDTSEYICLVNDRHIPEAIVDLLVQDVPDPPERPLLI-SF 151
             |...|..:::.::                                   :|||..|.|.|.: :.
Zfish   706 -PGPESTAVRIRTN-----------------------------------EDVPGAPPRKLEVEAL 734

  Fly   152 TSRSVNLSW----AHSQHP--RNAPVTHFIIETRE--GEDGIWE-QLARIYTK-TNATSYQ--VT 204
            .|.::.::|    :..||.  |...|.:..:|..|  |...|.: .|.....| ..:|.|:  :.
Zfish   735 NSTAIRVTWKPPLSGKQHGQIRGYQVIYSRLENGEPRGHPNIMDVALPEAQWKIEESTEYEAVIA 799

  Fly   205 GLTPFTVYSFRLLAVNKLGISPPSKESYYIVTLREAPTGKP---IPTTAHNTSSTSVYISWKAPP 266
            ||...|.||..:.|....|....||..  :||...|..|||   |.||..||:    .|.|:  |
Zfish   800 GLASETSYSVTVAAYTTKGDGARSKAK--VVTTTGAVPGKPTMIISTTVGNTA----LIQWQ--P 856

  Fly   267 PDTILGEFLGYRITYRPRDRDPNDTKEIYIRDNTVESHEIQNLQTYTQYKVTVQVFNPEGLGPET 331
            |..::||.:|||:.|:..:.:..:.:|.   ..|.:.|.:.:|.....|...:...|..|||.|.
Zfish   857 PKDMVGELMGYRLRYKRLEEENYEIREF---SRTDDHHTVTDLHKGATYSFHLSARNRAGLGEEY 918

  Fly   332 TILVMTDEGVPSK-PQNLTILDVSANSITMSWHPP--KNQNGAIAGYHVFHIHDNQTGVEIVKNS 393
            ...:.|.|.|||. |.||.::.::.::..::|.||  ..:||.|..|.|.:...|..     :||
Zfish   919 VKDIGTPEDVPSGFPLNLQVVGLTTSTTRLTWEPPALSERNGRIIHYIVVYRDINSK-----QNS 978

  Fly   394 RNSVETLIHFELQNLRPYTDYRVIVKAFTTKNEGEPSDQIAQRTDVGGPSAPAIVNLTCHSQESI 458
            .|.... ....:|.|||.|.|.:.|:|||:|..|..|..|..||....|:......:....:.|:
Zfish   979 TNRTSD-TQMTIQGLRPDTTYDIRVQAFTSKGGGPISPSIQSRTMSTSPAFATSFGVKAVMKTSV 1042

  Fly   459 TIRWRRPYEFYNTIDFYIIK----------------TRLAGQDT----------------HRDIR 491
            .:.|..|..:.:.:.|.|:.                |||. .||                .:.:.
Zfish  1043 LLTWEVPENYKSQVPFKILYNQQSVEVQGNLKRKLITRLQ-PDTDYSFVLMSRGNSAGGLQQQVS 1106

  Fly   492 INASAKELETAMILQ--------NLTTN-----------SYYEVKVAAATFSV---INPKKIVLG 534
            |..:....:|..:|.        .||.|           .||.|.|..:..|.   |||.::.|.
Zfish  1107 IRTAPDLFKTKPVLYTADQTNNGKLTINLPKVPTSAPVRCYYIVVVPVSQTSSRQWINPDEMELD 1171

  Fly   535 KFSESR-----------------------------------------IIQLQPNCEKLQ------ 552
            :..||.                                         |.:..||.:..|      
Zfish  1172 ELLESSEGAHLRRRRRHTDTVRPYIAAKLSTLPETFTLGDELDYSGFINRPLPNNQHFQCFVMAE 1236

  Fly   553 -----------------------PLLRQSHNDYNLAV-------LVGIIFSCFGIILIIMAFFLW 587
                                   |::.|..|....:|       ::|.:.:...||:|::|..|:
Zfish  1237 LKDQYPVTANEKQRTFSASPYSDPIIVQGENQMQRSVDQPEMLWVMGPVLAVVLIIIIVIAILLF 1301

  Fly   588 SRK--------------------CFHAAYYYLDDPPHHPNAPQVDWEVPVKIGDEIRAAVPVNEF 632
            ..|                    |..|:   ..||   ....:::::.|   |......:.|:|.
Zfish  1302 KSKQERKRASPLPKDDHSGGVKDCLLAS---SSDP---VEMRRLNYQTP---GMREHPPISVSEL 1357

  Fly   633 AKHVASLHADGDIGFSREYEAIQNECISDDLPCEHSQHPENKRKNRYLNITAYDHSRVHLHPTPG 697
            |.|:..|.|:..:.||:|||:|..   ......|:|....||.||||.|:.|||||||.|.|..|
Zfish  1358 ADHIERLKANDALRFSQEYESIDP---GQQFTWENSNLEVNKPKNRYANVIAYDHSRVVLTPVDG 1419

  Fly   698 QKKNLDYINANFIDGYQKGHAFIGTQGPLPDTFDCFWRMIWEQRVAIIVMITNLVERGRRKCDMY 762
            ...: ||||:|:||||:|.:|:|.||||||:|...|||||||||.:.|||:|.|.|:.|.|||.|
Zfish  1420 VPGS-DYINSNYIDGYRKQNAYIATQGPLPETLSDFWRMIWEQRASTIVMMTRLEEKSRVKCDQY 1483

  Fly   763 WPKDGVETYGVIQVKLIEEEVMSTYTVRTLQIKHLKLKKKKQCNTEKLVYQYHYTNWPDHGTPDH 827
            ||..|.||||:|||.:::...::||:|||..:      .|...:.::.|.|:.:..|||||.|::
Zfish  1484 WPIRGTETYGMIQVTMLDAVELATYSVRTFAL------YKNGSSEKREVRQFQFMAWPDHGVPEY 1542

  Fly   828 PLPVLNFVKKSSAANPAEAGPIVVHCSAGVGRTGTYIVLDAMLKQIQQKNIVNVFGFLRHIRAQR 892
            |.|:|.|:::..|.||.:|||:||||||||||||.:||:||||::::.:..|:::|.:..:|:||
Zfish  1543 PTPILAFLRRVKACNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQR 1607

  Fly   893 NFLVQTEEQYIFLHDALVEAIASGETNLMAE----QVEELK-----NCTPYLEQQYKNIIQFQPK 948
            |::||||:||||:|:||:||...|.|.:.|.    .:::|.     .....:|.::|.:...:..
Zfish  1608 NYMVQTEDQYIFIHEALLEAATCGNTEVPARNLYAHIQKLTQPSAGETVTAMELEFKRLANSKAH 1672

  Fly   949 DIHIASAMKQVNSIKNRGA-IFPIEGSRVHLTPKPGEDGSDYINASWLHGFRRLRDFIVTQHPMA 1012
            .....||....|..|||.. |.|.|.:||.|.|..|.:||||||||.:.|:|:.:.:|.||.|:|
Zfish  1673 TSRFISANLPCNKFKNRLVNIMPFESTRVCLQPIRGVEGSDYINASCIDGYRQQKAYIATQGPLA 1737

  Fly  1013 HTIKDFWQMVWDHNAQTVVLLSSLDDI---NFAQFWPDEATPIESDHYRVKFLNKTNKSDYVSRD 1074
            .|.:|||:|:|:||:..||:|:.|.::   ...|:||.|.: ....::.|..:.:.|...|:.|:
Zfish  1738 ETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERS-ARYQYFVVDPMAEYNMPQYILRE 1801

  Fly  1075 FVIQSIQDDYELTVKMLHCPSWPEMSNPNS---IYDFIVDVHERCNDY-RNGPIVIVDRYGGAQA 1135
            |.:...:|....|::......|||...|.:   ..|||..||:....: ::|||.:....|..:.
Zfish  1802 FKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRT 1866

  Fly  1136 CTFCAISSLAIEMEYCSTANVYQYAKLYHNKRPGVWTSSEDIRVIY 1181
            ..|..:|.:...|.|....:::|..|....:||.:..:.:..::.|
Zfish  1867 GVFITLSIVLERMRYEGVVDLFQTVKTLRTQRPAMVQTEDQYQLCY 1912

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp99ANP_651691.4 FN3 140..236 CDD:238020 27/108 (25%)
fn3 249..331 CDD:278470 22/81 (27%)
FN3 342..437 CDD:238020 31/97 (32%)
FN3 442..520 CDD:238020 21/128 (16%)
PTPc 646..911 CDD:214550 133/264 (50%)
PTPc 676..911 CDD:238006 123/234 (53%)
PTPc 935..1186 CDD:214550 76/255 (30%)
PTPc 963..1169 CDD:238006 69/213 (32%)
ptprfbXP_009296732.1 I-set 35..126 CDD:254352
Ig2_RPTP_IIa_LAR_like 155..233 CDD:319301
Ig3_RPTP_IIa_LAR_like 261..329 CDD:143216
FN3 334..423 CDD:238020
FN3 430..522 CDD:238020
FN3 527..615 CDD:238020
FN3 623..717 CDD:238020 18/76 (24%)
fn3 725..823 CDD:306538 24/97 (25%)
FN3 835..916 CDD:238020 26/89 (29%)
FN3 933..1021 CDD:238020 29/93 (31%)
PTPc 1397..1626 CDD:238006 123/235 (52%)
PTPc 1687..1917 CDD:238006 71/227 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
32.870

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