DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp99A and Ptprf

DIOPT Version :9

Sequence 1:NP_651691.4 Gene:Ptp99A / 43469 FlyBaseID:FBgn0004369 Length:1397 Species:Drosophila melanogaster
Sequence 2:XP_006502927.1 Gene:Ptprf / 19268 MGIID:102695 Length:1924 Species:Mus musculus


Alignment Length:1390 Identity:382/1390 - (27%)
Similarity:591/1390 - (42%) Gaps:355/1390 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 PATQAGRIFDVTNLDYVKVNAEAGKNVTIPCPGVN-EHSLVDTL---------VWKTASTTIAQF 84
            ||.....|....::.|..|:.|..|...:  .|:: |||..|.|         ||..|.|.:.. 
Mouse   637 PADSRNGIITQYSVAYEAVDGEDRKRHVV--DGISREHSSWDLLGLEKWTEYRVWVRAHTDVGP- 698

  Fly    85 ANRIPLLHSPRIQLLSDNFGLQFSPSLASDTSEYICLVNDRHIPEAIVDLLVQDVPDPPERPLLI 149
                               |.:.||.|.. |.|                    |||..|.|.:.:
Mouse   699 -------------------GPESSPVLVR-TDE--------------------DVPSGPPRKVEV 723

  Fly   150 S-FTSRSVNLSW----AHSQH-----------------PRNAPVTHFII------ETREGEDGIW 186
            . ..|.:|::||    .:.||                 ||..|:...::      ...|.||   
Mouse   724 EPLNSTAVHVSWKLPVPNKQHGQIRGYQVTYVRLENGEPRGQPIIQDVMLAEAQWRPEESED--- 785

  Fly   187 EQLARIYTKTNATSYQVTGLTPFTVYSFRLLAVNKLGISPPSKESYYIVTLREAPTGKP---IPT 248
                  |..|      ::||||.|.||..:.|....|....||..  :||...|..|:|   :.|
Mouse   786 ------YETT------ISGLTPETTYSITVAAYTTKGDGARSKPK--VVTTTGAVPGRPTMMVST 836

  Fly   249 TAHNTSSTSVYISWKAPPPDTILGEFLGYRITYRPRDRDPNDTKEIYIRDNTVE-SHEIQNLQTY 312
            ||.:|:    .:.|.  ||..:.||.||||:.||..|.         .|.||:: ..:.|:....
Mouse   837 TAMHTA----LLQWH--PPKELPGELLGYRLQYRRADE---------ARPNTIDFGKDDQHFTVT 886

  Fly   313 TQYKVTVQVF-----NPEGLGPETTILVMTDEGVPSK-PQNLTILDVSANSITMSWHPP--KNQN 369
            ..:|....||     |..|.|.|....:.|.|.|||. ||||.:..::.::..::|.||  ..:|
Mouse   887 GLHKGATYVFRLAAKNRAGPGEEFEKEITTPEDVPSGFPQNLRVTGLTTSTTELTWDPPVLAERN 951

  Fly   370 GAIAGYHVFHIHDNQTGVEIVKNSRNSVETLIHFELQNLRPYTDYRVIVKAFTTKNEGEPSDQIA 434
            |.|..|.|.: .|..:.:|: :|..|..    |..|..|:|.|.|.:.|:|.|:|..|..|..|.
Mouse   952 GHITNYTVVY-RDINSQLEL-QNVTNDT----HLTLLGLKPDTTYDIKVRAHTSKGAGPLSPSIQ 1010

  Fly   435 QRTDVGGPSAPAIVNLTCHSQESITIRWRRPYEFYNTIDFYIIKTRLAGQ----DTH------RD 489
            .||............:....:.|:.:.|..|..:.:.:.|.|:..   ||    |.|      .|
Mouse  1011 SRTMPVEQVFAKNFRVAAAMKTSVLLSWEVPDSYKSAVPFKILYN---GQSVEVDGHSMRKLIAD 1072

  Fly   490 IRIN------------------------------------ASA---------------------- 496
            ::.|                                    |||                      
Mouse  1073 LQPNTEYSFVLMNRGSSAGGLQHLVSIRTAPDLLPQKPLPASAFIEDGRFSLSMPQVQDPSLVRW 1137

  Fly   497 -----------------------KELETAMILQNL------------------------------ 508
                                   :|||...:|:.:                              
Mouse  1138 FYIVVVPIDRVGGNLLAPRWNTPEELELDELLEAIEQGEEKQRRRRRQAERLKPYVAAQVDVLPD 1202

  Fly   509 -----TTNSY-------------YEVKVAAATFSVINPKKIVLGKFSESRIIQLQPNCEKLQPLL 555
                 ...||             |:..|.|:....::.|:.....:|:..::|:.|..::.:|  
Mouse  1203 TFTLGDKKSYRGFYNRPLSPDLSYQCFVLASLKEPMDQKRYASSPYSDEIVVQVTPAQQQEEP-- 1265

  Fly   556 RQSHNDYNLAVLVGIIFSCFGIILIIMAFFLWSRKCFH--------------AAYYYLDDP---- 602
                   .:..:.|.:.:...||||::|..|:.||..|              :...:..||    
Mouse  1266 -------EMLWVTGPVLAVILIILIVIAILLFKRKRTHSPSSKDEQSIGLKDSLLAHSSDPVEMR 1323

  Fly   603 -----------PHHPNAPQVDWEVPVKIGDEIRAAVPVNEFAKHVASLHADGDIGFSREYEAIQN 656
                       |..||...:....|          :|:.:.|.::..|.|:..:.||:|||:|..
Mouse  1324 RLNYQTPGSSAPSCPNISSMRDHPP----------IPITDLADNIERLKANDGLKFSQEYESIDP 1378

  Fly   657 ECISDDLPCEHSQHPENKRKNRYLNITAYDHSRV---HLHPTPGQKKNLDYINANFIDGYQKGHA 718
               ......|:|....||.||||.|:.|||||||   .:...||.    ||||||:||||:|.:|
Mouse  1379 ---GQQFTWENSNSEVNKPKNRYANVIAYDHSRVLLTSIDGVPGS----DYINANYIDGYRKQNA 1436

  Fly   719 FIGTQGPLPDTFDCFWRMIWEQRVAIIVMITNLVERGRRKCDMYWPKDGVETYGVIQVKLIEEEV 783
            :|.||||||:|...||||:||||.|.:||:|.|.|:.|.|||.|||..|.||||:|||.|::...
Mouse  1437 YIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPVRGTETYGLIQVTLVDTVE 1501

  Fly   784 MSTYTVRTLQIKHLKLKKKKQCNTEKLVYQYHYTNWPDHGTPDHPLPVLNFVKKSSAANPAEAGP 848
            ::|||:||..:......:|::      :.|:.:..|||||.|::|.|:|.|:::..|.||.:|||
Mouse  1502 LATYTMRTFALHKSGSSEKRE------LRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGP 1560

  Fly   849 IVVHCSAGVGRTGTYIVLDAMLKQIQQKNIVNVFGFLRHIRAQRNFLVQTEEQYIFLHDALVEAI 913
            :||||||||||||.:||:||||::::.:..|:::|.:..:|:|||::||||:||:|:|:||:||.
Mouse  1561 MVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAA 1625

  Fly   914 ASGETNLMAE----QVEELKNCTP-----YLEQQYKNIIQFQPKDIHIASAMKQVNSIKNRGA-I 968
            ..|.|.::|.    .:::|....|     .:|.::|.:...:.......||....|..|||.. |
Mouse  1626 MCGHTEVLARNLYAHIQKLGQVPPGESVTAMELEFKLLANSKAHTSRFVSANLPCNKFKNRLVNI 1690

  Fly   969 FPIEGSRVHLTPKPGEDGSDYINASWLHGFRRLRDFIVTQHPMAHTIKDFWQMVWDHNAQTVVLL 1033
            .|.|.:||.|.|..|.:||||||||:|.|:|:.:.:|.||.|:|.:.:|||:|:|:||:..:|:|
Mouse  1691 MPYELTRVCLQPIRGVEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVML 1755

  Fly  1034 SSLDDI---NFAQFWPDEATPIESDHYRVKFLNKTNKSDYVSRDFVIQSIQDDYELTVKMLHCPS 1095
            :.|.::   ...|:||.|.: ....::.|..:.:.|...|:.|:|.:...:|....|::......
Mouse  1756 TKLREMGREKCHQYWPAERS-ARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTD 1819

  Fly  1096 WPEMSNPNS---IYDFIVDVHERCNDY-RNGPIVIVDRYGGAQACTFCAISSLAIEMEYCSTANV 1156
            |||...|.:   ..|||..||:....: ::|||.:....|..:...|..:|.:...|.|....::
Mouse  1820 WPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDM 1884

  Fly  1157 YQYAKLYHNKRPGVWTSSEDIRVIY 1181
            :|..|....:||.:..:.:..::.|
Mouse  1885 FQTVKTLRTQRPAMVQTEDQYQLCY 1909

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp99ANP_651691.4 FN3 140..236 CDD:238020 28/123 (23%)
fn3 249..331 CDD:278470 25/87 (29%)
FN3 342..437 CDD:238020 31/97 (32%)
FN3 442..520 CDD:238020 22/216 (10%)
PTPc 646..911 CDD:214550 131/267 (49%)
PTPc 676..911 CDD:238006 121/237 (51%)
PTPc 935..1186 CDD:214550 75/255 (29%)
PTPc 963..1169 CDD:238006 68/213 (32%)
PtprfXP_006502927.1 I-set 33..124 CDD:369462
Ig2_RPTP_IIa_LAR_like 152..232 CDD:319301
Ig3_RPTP_IIa_LAR_like 252..320 CDD:143216
FN3 325..414 CDD:238020
FN3 421..513 CDD:238020
FN3 518..607 CDD:238020
FN3 615..709 CDD:238020 21/94 (22%)
FN3 716..822 CDD:238020 28/122 (23%)
FN3 827..916 CDD:238020 29/103 (28%)
FN3 925..1013 CDD:238020 29/93 (31%)
FN3 1022..>1081 CDD:238020 11/61 (18%)
PTP_DSP_cys 1352..1627 CDD:391942 136/287 (47%)
R-PTP-F-2 1629..1919 CDD:350477 79/282 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.870

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