DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp99A and ptp-4

DIOPT Version :9

Sequence 1:NP_651691.4 Gene:Ptp99A / 43469 FlyBaseID:FBgn0004369 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_001255470.1 Gene:ptp-4 / 177898 WormBaseID:WBGene00010558 Length:1159 Species:Caenorhabditis elegans


Alignment Length:1279 Identity:347/1279 - (27%)
Similarity:571/1279 - (44%) Gaps:238/1279 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 FVLLLILATLPATQAGRIFDVTNLDYVKVNAEAGKNVTIPCPG----VNEH--------SLVDTL 72
            |:.|:.|          .:...:.:.:.|.::......:.||.    :..|        .||..|
 Worm     6 FIFLIFL----------FWKFDSAESISVTSKNATEALLRCPPAENFIRTHMAPDFETPRLVRRL 60

  Fly    73 VWKTASTTIAQF-------ANRIPLLHSPRIQLLSDNFGLQFSPSLASDTSEYICLVNDRHI--- 127
            .|....:.:|.:       ::|...:...|.||:...:.|:.||....|:..|.|.:....:   
 Worm    61 DWFQDDSLVASYQQDILADSSRQWWVSDGRYQLIRPFYTLRVSPVTPEDSGTYRCRLETDPLFSS 125

  Fly   128 PE--AIVDLLVQDVPDPPERPLLISFTSRSVNLSWAHSQHPRNAPVTHFIIETREGEDGIWEQLA 190
            |:  |..:|.|...|..|..|.:.:||:||:.|.|.|:....:.|:..|.:..|...|.....:|
 Worm   126 PQSTATQELAVMVKPVAPSSPEIKTFTNRSITLVWTHNAARAHRPILRFSVSVRTVSDNTRFVMA 190

  Fly   191 RIYTKTNATSYQVTGLTPFTVYSFRLLAVNKLGISPPSKESYYIVTLREAPTGKPIPTTAHNTSS 255
               ..:|||:..|..|:|:|:|:|.:.|.|..|.|....|:.: .||.|:|...|......|.:|
 Worm   191 ---APSNATTVIVDNLSPYTLYAFSVRAENSAGSSDFGPETTF-RTLGESPNRPPQIQKIRNITS 251

  Fly   256 TSVYISWKAPPPDTILGEFLGYRITYRPRDRDPNDT--KEIYIRDNTVESHEIQNLQTYTQYKVT 318
            ..|.::  ..|||.:.||...|.:..:.    .|:|  :::.....|.....|..|...|.|.:.
 Worm   252 ECVEVT--ITPPDEMNGELDKYLVLIQA----VNETIPRKMTFDKPTSTPLTICALSPSTDYALA 310

  Fly   319 VQVFNPEGLGPETTILVMTDEGVPS-KPQNLTILDVSAN-SITMSW-HPPKNQNGAIAGYHVFH- 379
            ::..|..|..|:.|::..|::.||: .|..:|.|.|... .||:.| .||.|....:..||::: 
 Worm   311 IEADNGFGTSPQATLVFHTEDSVPNWSPSTITTLPVVGKPEITVLWPAPPLNATEKVIKYHLYYK 375

  Fly   380 -IHDNQTGVEIVKNSRNSVET-LIHFELQNLRPYTDYRVIVKAFTTKNEG-EPSDQIAQRTDVGG 441
             .:::|..:|.:..|.|.|:: |..:.|.:|.|.|.||:.|.|.|.|.|| :.:|.:|| ||||.
 Worm   376 AKNEDQWKIEHLNVSPNGVKSKLFKYRLVDLNPNTQYRIRVSASTIKGEGAQSADSVAQ-TDVGE 439

  Fly   442 PSAPAIVNLTCHSQESITIRWRRPYE-FYNTIDFYIIKTRLAGQDTHRDIRINASAKELETAMIL 505
            |......:|....:..:.:||.  || ..|:........::..|.|  .::.|.:...|:    :
 Worm   440 PGTVTFKDLNFDCKNGVKLRWN--YEPSVNSKKSPTFTVKVTNQTT--SLQFNTTMLSLD----I 496

  Fly   506 QNLTTNSYYEVKVAAATFSVINPKKIVLGKFSESRIIQLQPNC----------EKLQPLLRQSHN 560
            .:|:....|.:::.....|.|:...|::||:|:|....|:..|          ||...|...:.|
 Worm   497 IDLSLYDEYTLRIIVLERSTIDNSTILIGKYSDSHQFILKDKCSYQSSFCSPGEKCAKLTSSAGN 561

  Fly   561 DYNLAVLVGIIFSCFGIILIIMAFFLWSRKCFHAAYY------------------YLDD--PPHH 605
            ...::||: :||:     :||.||.     ||...::                  ||::  |..:
 Worm   562 PRYISVLI-VIFA-----IIIFAFI-----CFVIVHFARGSMNFKHLLKKKEKCVYLEEISPLVY 615

  Fly   606 PNAPQVDWEVPVKIGDEIRAAVPVNEFAKHVASLHADGDIGFSREYEAIQNECI---SDDLPCEH 667
            .:|.|.|              :||..|..:|..|:.:..:.|..:::.::::..   |.|....:
 Worm   616 DSAGQED--------------IPVELFYGYVEDLNRNDSLKFKTQFQILESQTSGIDSVDSGESN 666

  Fly   668 SQHPENKRKNRYLNITAYDHSRVHLHPTPGQKKNLDYINANFIDGYQKGHAFIGTQGPLPDTFDC 732
            |...||.:||||.||.|.:.:|:.|:...|.    ||||||::|...:.:|:|.||.|||.||..
 Worm   667 SSSDENSQKNRYNNIGAIEATRIRLNSPTGN----DYINANYVDSCNERNAYIATQAPLPSTFSD 727

  Fly   733 FWRMIWEQRVAIIVMITNLVERGRRKCDMYWP--KDGVETYGVIQVKLIEEEVMSTYTVRTLQIK 795
            ||.|||::|..|||.|||:||.|:||||.|||  :|..:|:|..||.|:.|...:.::.|.|.:|
 Worm   728 FWSMIWQERSNIIVCITNMVEDGKRKCDQYWPSQQDSPQTFGNYQVTLVSESTNAHFSHRILDLK 792

  Fly   796 HLKLKKKKQCNTEKLVYQYHYTNWPDHGTPDHPLPVLNFVKKSSAANPAEAGPIVVHCSAGVGRT 860
            ..|....    .|:.|:|.|:..|||||.|....|:|:||..:|..:  ..||:||||||||||:
 Worm   793 IAKAVPA----VERKVHQLHFMGWPDHGVPSSVFPLLSFVHYTSDIH--STGPVVVHCSAGVGRS 851

  Fly   861 GTYIVLDAMLKQIQQKNIVNVFGFLRHIRAQRNFLVQTEEQYIFLHDALVEAIASGETNLMAEQV 925
            |:||::|:|.:.:.....:||.|.|.|:|.||..||||.|||||.|:|:.:.|..|.|.:.::..
 Worm   852 GSYILVDSMRRHLISFRRLNVQGHLTHMRRQRAKLVQTLEQYIFCHEAIRQLIRHGITRVHSDLF 916

  Fly   926 --------EELKNCTPYLEQQYKNI--IQFQPKDIHIASAMKQVNSIKNRGAIFPIEGSRVHLTP 980
                    ||..|....::.|:::|  .:.||:.:                    ||        
 Worm   917 MRYLHYLSEENLNGKTRMQLQFEDICDCKHQPRCL--------------------IE-------- 953

  Fly   981 KPGEDGSDYINASWLHGFRRLRDFIVTQHPMAHTIKDFWQMVWDHNAQTVVLLSSLDDINFAQFW 1045
                  ||.|.   |.|:.|..:|:|..  ..:..:|.|::.|....||:|:|:..|     .||
 Worm   954 ------SDVIT---LPGYHRSDEFMVGS--WGNECEDLWRLTWQQKVQTIVILNQRD-----SFW 1002

  Fly  1046 PDEATPIESDHYRVKFLNKTNKSDYVSRDFVIQSIQDDYELTVKM-------LHCPSWPEMSNPN 1103
            ....:.|.....:::.          ..:||:.. :||.:|.|::       |....|.|:.|  
 Worm  1003 RKLPSCIYDGEIQLQH----------GDNFVLLQ-KDDQQLCVRIVNVSRADLDTDFWREIEN-- 1054

  Fly  1104 SIYDFIVDVHERCNDYRNGPIVIV-DRY----------------------GGAQACTFCAISSLA 1145
                    |.::...|.:.|::|: .:|                      ..|.|.:.||.::||
 Worm  1055 --------VQKQRITYHDAPLLILAHKYPPSVPSPTDSTSTLSLSILFNDDTALAFSICAATTLA 1111

  Fly  1146 IEMEYCSTANVYQYAKLYHNKRPGVWTSSEDIRVIYNILSFLPG 1189
            .::|.....:|.|....|...:.|::.|.::|.:||..:|.|.|
 Worm  1112 CQLETTGCVDVVQVLSSYTEIQCGIFASKQEIEIIYEKMSQLVG 1155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp99ANP_651691.4 FN3 140..236 CDD:238020 29/95 (31%)
fn3 249..331 CDD:278470 19/83 (23%)
FN3 342..437 CDD:238020 34/101 (34%)
FN3 442..520 CDD:238020 13/78 (17%)
PTPc 646..911 CDD:214550 116/269 (43%)
PTPc 676..911 CDD:238006 110/236 (47%)
PTPc 935..1186 CDD:214550 55/282 (20%)
PTPc 963..1169 CDD:238006 46/235 (20%)
ptp-4NP_001255470.1 IG_like <83..120 CDD:214653 9/36 (25%)
FN3 140..232 CDD:238020 29/95 (31%)
FN3 237..326 CDD:238020 22/94 (23%)
FN3 338..435 CDD:238020 33/97 (34%)
PTPc 642..900 CDD:214550 115/267 (43%)
PTPc 675..900 CDD:238006 109/234 (47%)
Y_phosphatase <977..1128 CDD:278528 35/176 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28663
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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