DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp99A and ptp-3

DIOPT Version :9

Sequence 1:NP_651691.4 Gene:Ptp99A / 43469 FlyBaseID:FBgn0004369 Length:1397 Species:Drosophila melanogaster
Sequence 2:NP_001263671.1 Gene:ptp-3 / 174685 WormBaseID:WBGene00004215 Length:2248 Species:Caenorhabditis elegans


Alignment Length:1802 Identity:402/1802 - (22%)
Similarity:614/1802 - (34%) Gaps:719/1802 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 ATLPATQAGRIFDVTNLDYVKVNAEAGKNVTIPCPGVN----------EHSLVDTLV--WKTAST 79
            ||.|.:...|..   |.|.:.|...       ||...|          .:.||.|.:  ||.   
 Worm   505 ATAPVSPQARSL---NRDSILVKWG-------PCEQPNGLITGYKVYYTNDLVTTPIREWKQ--- 556

  Fly    80 TIAQFANRIPLLHSPRIQLLSDNFGLQFSPSLASDTSEYICLVNDRHIPEAIVDLLV-----QDV 139
                        |..:    ||.|....: .|..|:..::.::......::.:..||     |.:
 Worm   557 ------------HDAK----SDEFMTTIN-GLEPDSRYFVRVIAQNSEGDSPLSTLVTVATRQGI 604

  Fly   140 PDPPERPLLISFTSRSVNLSWAHSQHPRNAPVTHFII--ETREGEDGIWEQLARIYTKTNA-TSY 201
            |..|....:.:..||.:.|:|....:  ::||..:.:  .|.:||..:        |.|:. ..:
 Worm   605 PGQPPMLTVKALDSRRMQLTWDKPLY--SSPVVGYTVRYNTSDGEKEL--------TLTSPHEKH 659

  Fly   202 QVTGLTPFTVYSFRLLAVNKLGISPPSKESYYIVTLREAPTGKPIPTTAHNTSSTSVYISWKAPP 266
            .||||.|...|.||:.|.:..| .....|.....|:...|...|...:|..|||.||.|.||.|.
 Worm   660 VVTGLHPDKYYYFRVAAYSDRG-QGEFTEPMISKTIASIPLSSPTIVSAAATSSKSVEIRWKGPE 723

  Fly   267 PDTILGEFLGYRITY-------------RPRDRDPNDTKEIYIRDNTV-----ESHEIQNLQTYT 313
            ...:.|....|||.|             ...|.|.:|:.....|.:.|     .|:.:.:|..|:
 Worm   724 QKKLNGVLTAYRINYFRLEDSKTANLESVEYDEDMDDSSSFLDRMSVVVPSDATSYVLSDLLPYS 788

  Fly   314 QYKVTVQVFNPEGLGPETTI-LVMTDEGVPSKPQNLTILDVSANSITMSWHPPKNQNGAIAGYHV 377
            .|::||.....:|.|||::| :|.|.|.|||.|:|......||.|:.::|..|...|||:.||:|
 Worm   789 SYEITVAASTMDGYGPESSIRVVKTLEDVPSAPRNFNAELTSATSVKLTWDAPAAANGALLGYYV 853

  Fly   378 FHIHDNQTGVEIVKNSRNSVETLI------HFELQNLRPYTDYRVIVKAFTTKNEGEPSDQIAQR 436
            : :.....|..:|:........:|      :|||.:|.|.|:|...:.||....:||.|::.:..
 Worm   854 Y-LDRMVNGEPVVEKGSKKRIVMIRDSSKRYFELDSLDPNTEYSFRLNAFNRNGDGEFSERKSII 917

  Fly   437 TDVGGPSAPAIVNLTCHSQES---ITIRWR--------RPYEFYN----------------TIDF 474
            |....|.||.||:::....|.   ..|.|:        .|.|.||                |:|.
 Worm   918 TQGIPPEAPEIVSVSLDRDEPPVVARIEWKMPKMKPNETPIEKYNLWLRAQGYPDSYVKAKTVDG 982

  Fly   475 YIIKTRLAG--QDTHRDIRINASAKE----------------------------LETAMILQ--- 506
            ..:.|.::|  .....|:.:.|..:|                            ::..:::.   
 Worm   983 TDLSTTISGLWMGVVYDVLLAAENREGRSQNATETIATPVGSPDGEPIDVQYEVMKGKIVVSWRP 1047

  Fly   507 --------NLT------------------------TNSYYEV--------KVAAATFSVI----- 526
                    |:|                        |:|.:||        ||||||...|     
 Worm  1048 PSEEKRNGNITSYKAILSAMDATADRYEQPVPAPSTSSTFEVNVRRAYLFKVAAATMKGIGPYSP 1112

  Fly   527 ----------------------------------------------------------------- 526
                                                                             
 Worm  1113 VLTINPDPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNRMDTEKWKQLPVV 1177

  Fly   527 -----NPKKI-----------------------------------------------VLGKFSES 539
                 |||:.                                               ||.|.|.|
 Worm  1178 SIDKENPKRFAVVSDLNAHKPYAFCVLAVKNNRQGPCSDPPTVLESVTPTYMVQNLRVLWKTSNS 1242

  Fly   540 ----------------------------------------------------------------- 539
                                                                             
 Worm  1243 VQLTWEYNGPRNVGFYVNHTGRKDYVNHELQEKTMSTPGFGQDVDEKHREYLWTNLRPHMMYTIH 1307

  Fly   540 ---------------------------------------------RIIQLQPNCEKLQPL----- 554
                                                         ::|:|.|..|:..|:     
 Worm  1308 VGVRTLPPGARKYWPQEVVTITDPTGPPFVDVPKLVDSSGTQPGQQMIRLTPATEEYGPISHYWI 1372

  Fly   555 ----------------------------------------------------------------- 554
                                                                             
 Worm  1373 ILVPANYSTEDVVNLDPIELEKATAEKRAQLARSLSVSPSKKLKRKASEVGDDSQSASYHPKEKR 1437

  Fly   555 -------------------LRQSH-------------------------------------ND-- 561
                               ::|.:                                     ||  
 Worm  1438 ARRATVPGAYVTARLSADRVKQQYRNNQPFIVGDSQLYDGFTNYPLEHNLHYRLMMRAFAKNDVR 1502

  Fly   562 ------------------YNLAVL--------------------VG------IIFSCFGIILIIM 582
                              |:.:||                    ||      ::||..|:::   
 Worm  1503 TKDSFEQRAPMSEKLSRMYSDSVLTEPFTIKSALRGASQKSSPWVGACIAFLVLFSIVGMLI--- 1564

  Fly   583 AFFLWSRKC---------FHAAY-------------------------------------YYLDD 601
               .|..:|         .|.:.                                     |...:
 Worm  1565 ---CWWLRCNKKSAGRHPRHGSITKVALTGNIMNGGGGIPGETSKLLSTSNEYGRQIMNPYEQMN 1626

  Fly   602 PPHHPN------------------APQVDWEVPVKI------GDEI----RAAVPVNEFAKHVAS 638
            ..||..                  ||     |||.|      |:.:    ..|||:.|.|.|:..
 Worm  1627 GNHHMESSMDLYPLPTSHSRSNGYAP-----VPVAIPSLPNNGNNMTTVSHPAVPIAELANHIER 1686

  Fly   639 LHADGDIGFSREYEAIQNECISDDLPCEHSQHPENKRKNRYLNITAYDHSRVHLHPTPGQKKNLD 703
            |..:.:.||..|:|:|:.   ......|||....||.||||.|:.|||||||.|....|. ..:|
 Worm  1687 LRMNNNAGFQSEFESIET---GQHFTWEHSSADMNKHKNRYANVAAYDHSRVVLSNVEGY-PGMD 1747

  Fly   704 YINANFIDGYQKGHAFIGTQGPLPDTFDCFWRMIWEQRVAIIVMITNLVERGRRKCDMYWPKDGV 768
            |||||::|||.|..::|.||||||:||..||||:||::...|||:|||.||.|.|||.|||..|.
 Worm  1748 YINANYVDGYDKPRSYIATQGPLPETFSDFWRMVWEEQSVTIVMLTNLEERSRVKCDQYWPSRGT 1812

  Fly   769 ETYGVIQVKLIEEEVMSTYTVRTLQIKHLKLKKKKQCNTEKLVYQYHYTNWPDHGTPDHPLPVLN 833
            .|||.|:|.|:|...::.||:||:::|.:...:.::      :....||.|||||.||||.|.|.
 Worm  1813 ATYGDIEVTLLESVHLAHYTMRTMRLKMVGEPEVRE------IKHLQYTAWPDHGVPDHPTPFLI 1871

  Fly   834 FVKKSSAANPAEAGPIVVHCSAGVGRTGTYIVLDAMLKQIQQKNIVNVFGFLRHIRAQRNFLVQT 898
            |:|:....||.:||||:.|||||:||||.:||:|.||::::..|.|:::|.:..:||||:::|||
 Worm  1872 FLKRVKTLNPNDAGPIISHCSAGIGRTGAFIVIDCMLERLRYDNTVDIYGCVTALRAQRSYMVQT 1936

  Fly   899 EEQYIFLHDALVEAIASGETNLMAEQV------------EELKNCTPYLEQQYKNIIQFQPKDIH 951
            ||||||:|||:::|:.||.|.:.|.::            ::|..    ::.:::::...:.....
 Worm  1937 EEQYIFIHDAVLDAVNSGSTEVPASRLHQHLHILSQPSADQLSG----IDMEFRHLTTLKWTSNR 1997

  Fly   952 IASAMKQVNSIKNR--GAIFPIEGSRVHLTPKPGEDGSDYINASWLHGFRRLRDFIVTQHPMAHT 1014
            ...|...||..|||  .|: |.:.:||.:...||.||||||||||:.|::....:|.||.|...|
 Worm  1998 CTVANLPVNRPKNRMLSAV-PYDSNRVIMRLLPGADGSDYINASWIDGYKERGAYIATQAPTNET 2061

  Fly  1015 IKDFWQMVWDHNAQTVVLLSSLDDINFAQ---FWPDEATPIESDHYRVKFLNKTNKSDYVSRDFV 1076
            ..|||:.:|:||:..:.:|...::....|   :||.| |.::.....|:.:.:.:...|..|:|.
 Worm  2062 AADFWRAIWEHNSPIIAMLVRTNERGQEQCSDYWPLE-TGVQVGMLVVEPMAEYDMKHYHLREFR 2125

  Fly  1077 IQSIQDDYELTVKMLHCPSWPEMSNPNS---IYDFIVDVHERCNDYR----NGPIVIVDRYGGAQ 1134
            |..|......||:..|...||::..|::   ..||:..||   |.|.    .|||.:....|..:
 Worm  2126 ISDINTREVRTVRQFHFMEWPDVGKPHTADHFLDFVTQVH---NTYAQFGCTGPITVHCCSGAGR 2187

  Fly  1135 ACTFCAISSLAIEMEYCSTANVYQYAKLYHNKRPGVWTSSEDIRVIY 1181
            ...|.|:|.:...|......:|:...||...:|..:....|....:|
 Worm  2188 TAVFIALSIILDRMRAEHVVDVFTTVKLLRTERQNMIQEPEQYHFLY 2234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp99ANP_651691.4 FN3 140..236 CDD:238020 24/98 (24%)
fn3 249..331 CDD:278470 29/99 (29%)
FN3 342..437 CDD:238020 30/100 (30%)
FN3 442..520 CDD:238020 27/177 (15%)
PTPc 646..911 CDD:214550 131/264 (50%)
PTPc 676..911 CDD:238006 121/234 (52%)
PTPc 935..1186 CDD:214550 72/259 (28%)
PTPc 963..1169 CDD:238006 67/217 (31%)
ptp-3NP_001263671.1 I-set 93..184 CDD:254352
Ig 106..185 CDD:299845
IG_like 201..287 CDD:214653
Ig 212..288 CDD:299845
IG_like 302..378 CDD:214653
Ig 309..377 CDD:299845
FN3 383..499 CDD:238020
FN3 507..600 CDD:238020 21/122 (17%)
FN3 605..693 CDD:238020 24/98 (24%)
FN3 700..813 CDD:238020 33/112 (29%)
FN3 818..918 CDD:238020 30/100 (30%)
FN3 923..1020 CDD:238020 19/96 (20%)
FN3 1027..1116 CDD:238020 13/88 (15%)
fn3 1125..1213 CDD:278470 3/87 (3%)
PTPc 1694..1949 CDD:214550 131/264 (50%)
PTPc 1720..1949 CDD:238006 121/235 (51%)
PTPc 1980..2239 CDD:214550 72/264 (27%)
PTPc 2008..2239 CDD:238006 69/232 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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