DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp1 and UBP9

DIOPT Version :9

Sequence 1:NP_001263061.1 Gene:Usp1 / 43462 FlyBaseID:FBgn0028476 Length:1078 Species:Drosophila melanogaster
Sequence 2:NP_011024.1 Gene:UBP9 / 856835 SGDID:S000000900 Length:754 Species:Saccharomyces cerevisiae


Alignment Length:716 Identity:145/716 - (20%)
Similarity:253/716 - (35%) Gaps:183/716 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 VGKKRRTPGGLKRTRGNKLLKELEIQSPETAAAIAAAQAELNAAGKSGAAGARSSRKRTNTMSLY 242
            |.:|:..|.  |.|:||.     ||....|:........:.:.| ||.:|.:.:|...:|..| :
Yeast     8 VNRKKSHPE--KNTQGND-----EINRKATSLKKTKGSGDPSIA-KSPSAKSSTSSIPSNLAS-H 63

  Fly   243 DRR--FQTTTEERRVANGYGGNAARSVTGSSSNEIESQEPQSHQYYG--------------PNGG 291
            :||  |.:.|:.......|..:.....:.|...|.:|......:.:.              |.| 
Yeast    64 ERRSKFSSQTDNLAGNKHYHEHYHNMASTSDEREYDSSTTYEDRAFDTESSILFTTITDLMPYG- 127

  Fly   292 SNAAGAGAGLNGSAAALNHAPSMGTLCNIGNSCYLNSVVYTLRFAPHFLHNLHHLIQDLNVVQQT 356
                      :||.....:.       |.||:||.|||:..|...|.|..|:....:.:..|.: 
Yeast   128 ----------DGSNKVFGYE-------NFGNTCYCNSVLQCLYNIPEFRCNVLRYPERVAAVNR- 174

  Fly   357 IVRQQTARSASLGKNVSAAQLEHARSWSSKDLATSTDQYSGQNGGVNSGNGGSGSSKSTHQSVTE 421
             :|:...:.:.:            |.::::...|||          ||||..:|...:.::. ..
Yeast   175 -IRKSDLKGSKI------------RVFTNESFETST----------NSGNSNTGYQSNDNED-AH 215

  Fly   422 KLHELYNNLHGNEMADSTEPY-------------------HADTLLHAIQDVNATFEGNQQQDAH 467
            ..|.|..:...|..:.:.|..                   :.|:   |.:|.|...|  :.|..|
Yeast   216 NHHHLQQSDQDNSSSSTQEKQNNFERKRNSFMGFGKDKSNYKDS---AKKDDNNEME--RPQPVH 275

  Fly   468 EFLMCVLNCIRETNQSLIKAIGE-CPEVIANGYIANP--DEVDTGEGQDRTDSTASQNLNAGNGS 529
            ..:|        .:.:|.:.:.| |.::|    :..|  .:.|:......||..|:.:....:..
Yeast   276 TVVM--------ASDTLTEKLHEGCKKII----VGRPLLKQSDSLSKASTTDCQANSHCQCDSQG 328

  Fly   530 LATSQTTTTKTSFFSRKSKRKDEVKPSKSTRVQS-PLKENSPTAGGITGA-----GTAHATANSL 588
               |:.|:.............|.|..|.:.:..: |..|....|..|.|.     ...:.|..:.
Yeast   329 ---SRITSVDDDVLVNPESCNDAVNNSNNNKENTFPTSEQRKKAALIRGPVLNVDHLLYPTEEAT 390

  Fly   589 FYLNTVDLSGASSTSGSASTSASGVVSTSAALPTPPQATKYSSDDEMNSATVLKD---------- 643
            .|....|:    ..|.:.:.|.:|:||       |.:..|....:.:...|:::.          
Yeast   391 LYNGLKDI----FESITENLSLTGIVS-------PTEFVKILKKENVLFNTMMQQDAHEFLNFLL 444

  Fly   644 ------------KMRL-EERIRELNLNFFSSDFEGIVVLTTKCLSCETITRQKQGMLDISVPVPI 695
                        :||. .::....|.||.:..|:|.:....|||:|:.||.:.:..||.  |:.:
Yeast   445 NDFSEYIQRNNPRMRFGPQKTDNSNDNFITDLFKGTLTNRIKCLTCDNITSRDEPFLDF--PIEV 507

  Fly   696 SGYDNADLQDKPSTYIQNSCITKEYFRGENKYSCNQCTGYTEAIRSISYEVLPRLLVIQLNRFSG 760
            .|.:..|:|....:|.|     :|...|.||:.||:|.|..||.|.:..:.||.:|.:.|.||..
Yeast   508 QGDEETDIQKMLKSYHQ-----REMLNGVNKFYCNKCYGLQEAERMVGLKQLPHILSLHLKRFKY 567

  Fly   761 GMEKVSTY-------------VPTTFTLPCFCATCCELGEGNKLHVYKLYSVITHVGATLTVGHY 812
            ..|:.|..             |.:||....:             ..|:|..|:.|:|:....|||
Yeast   568 SEEQKSNIKLFNKILYPLTLDVSSTFNTSVY-------------KKYELSGVVIHMGSGPQHGHY 619

  Fly   813 I 813
            :
Yeast   620 V 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp1NP_001263061.1 Peptidase_C19 308..819 CDD:271592 116/570 (20%)
UBP9NP_011024.1 Peptidase_C19 135..>154 CDD:351799 9/25 (36%)
Peptidase_C19 390..665 CDD:351799 61/262 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1864
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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