DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp1 and Usp47

DIOPT Version :10

Sequence 1:NP_651687.3 Gene:Usp1 / 43462 FlyBaseID:FBgn0028476 Length:1078 Species:Drosophila melanogaster
Sequence 2:NP_523937.2 Gene:Usp47 / 38644 FlyBaseID:FBgn0016756 Length:1556 Species:Drosophila melanogaster


Alignment Length:927 Identity:169/927 - (18%)
Similarity:296/927 - (31%) Gaps:300/927 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   355 QTIVRQQTARSASLGKNVSAAQLEHARSWSSKDLATSTDQYSGQNGGVNSGNGGSGS--SKSTHQ 417
            :|.:..:::...:.....:||::  ::..|.|....|.::....:..:||.|..|.|  :|.|.:
  Fly   165 KTSISSESSPEKTSKIKTTAAKI--SKPGSEKAPRASPEECPELSTEINSKNTSSESPVAKKTAK 227

  Fly   418 SVTEKLHELYNNLHGNEMADSTEPYHADTLLHAIQDVNATFEGNQQQDAHEFLMCVLNCIRETNQ 482
            ..::...||.:.:..:......:....|||              .:|...|.|.     :....:
  Fly   228 VTSKPTLELLSPIKPSSPIKELDCEPVDTL--------------SKQQLSEQLQ-----LYPQGR 273

  Fly   483 SLIKAIGECP-------------EVIANGYIANPDEVDTGEGQDRTDSTASQNLNAGNG-----S 529
            :||..:.:.|             :.:|.|..|:|..:  |.|.|....|...::....|     :
  Fly   274 NLISPVDDAPSDLFISDAEQLSDDDLALGASASPTML--GPGYDYGAPTGDSDVEGVTGVTDPST 336

  Fly   530 LATSQTTTTKTSFFSRKSKRKDEVK-------------PSKSTRVQSPLKENSPTAGGITG---- 577
            :.|...|....|.|.|:....||::             .|.:|..::..::.|....|..|    
  Fly   337 IGTDDGTYPALSNFYRRKYGGDELRAWQRVNTTGADFVSSATTETEAEARQASLGPRGYVGLVNQ 401

  Fly   578 AGTAHATA------------NSLF--------------------YLNTVDLSGASSTSGSASTSA 610
            |.|.:..:            |:|:                    :|| :..|..::...:..|.:
  Fly   402 AMTCYLNSLLQALFMTPEFRNALYRWEFDNDNEAKNIPYQLQKLFLN-LQTSPKAAVETTDLTRS 465

  Fly   611 SGVVSTSAALPTPPQATKYSSDDEMNSATVLKDKMRLEERIREL-NLNFFSSDFEGIVVLTTKCL 674
            .|..||.|          :...|......|:.|  .||.:.:.. ..|..|:.:||.:....|||
  Fly   466 FGWDSTEA----------WQQHDIQELCRVMFD--ALEHKFKNTKQANLISNLYEGKMNDYVKCL 518

  Fly   675 SCETITRQKQGMLDISVPVPISGYDNA--DLQDKPSTYIQNSCITKEYFRGENKYSCNQCTGYTE 737
            .|.|...::...|||.:||...|..:|  .:::....::|     .|...|.|:|.|.:|....:
  Fly   519 ECNTEKTREDTFLDIPLPVRPFGSSSAYGSIEEALRAFVQ-----PETLDGNNQYLCEKCKKKCD 578

  Fly   738 AIRSISYEVLPRLLVIQLNRFSGGME-----KVSTYV--PTTFTLPCF----------------- 778
            |.:.:.::..|.:|.:.|.||....:     |::..|  |.|..|..|                 
  Fly   579 AHKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRVTFPQTLNLNTFINRSGNSGEQNSQLNGT 643

  Fly   779 ---CATCCELG-------------------------------------------EGNKLHVYKLY 797
               |:| .:.|                                           :|:..::|:|:
  Fly   644 VDDCST-ADSGSAMEDDNLSSGVVTTASSSQHENDLNDEDEGIDMSSSTSKSAKQGSGPYLYELF 707

  Fly   798 SVITHVGATLTVGHYIAYTCFLDLASDYVN----CPKDRRNTMTNSQTMA-----------SQAV 847
            :::.|.|:. :.|||.||      ..|:.|    |..|:..|....:.:.           |.|.
  Fly   708 AIMIHSGSA-SGGHYYAY------IKDFDNNEWFCFNDQNVTSITQEDIQRSFGGPNGSYYSSAY 765

  Fly   848 PSNEN----------AAPNNGSSSVASTP------------------------VIAAASALAS-- 876
            .|:.|          |..|...:.||..|                        :.....||..  
  Fly   766 TSSTNAYMLMYRQVDAKRNELVAKVADFPEHIKTLLPKLHSEEETRVSRLGRHITVTDLALPDLY 830

  Fly   877 -----SGNILMKKMKFGRSKASSSGDMSKNVKQVNGIISKNITNGIGKLSISTTCQGVNCCAMRL 936
                 ..|..:||||..|...|    .|.|:..|       :.:....|::........|..:..
  Fly   831 KPRVYFYNPSLKKMKITRVYVS----QSFNINLV-------LMSAYEMLNVEQFAPLSRCRLVAY 884

  Fly   937 CCTQQTSSSNSTSCSDFSEESLQNGSNSNLSF-------GGSGSTYPTGYGSTGRGGVRANYAHG 994
            ..:..|...:..||:|.:...|:...|.:|.|       ......||                  
  Fly   885 NSSMDTIIQSLESCTDPALTELRAAQNYSLDFLLEYRAEDQEFEVYP------------------ 931

  Fly   995 GPDPI-WYMCDDD-----------KIKAMTQREFEELLSPTRKITITPYLLFYARFDLQPQKATP 1047
             |:.| ||:...|           ...|..:||..::|  .|.|.:..: :...:|.|...:||.
  Fly   932 -PNGITWYVFKVDLSTMAMDGPFLVYSAAREREASDVL--RRSIALRLH-ISEQQFLLATVRATV 992

  Fly  1048 PMPGSSTTP-PPPSSAQ 1063
            |....|..| |.|.:.|
  Fly   993 PKAFVSYDPHPTPEALQ 1009

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp1NP_651687.3 Peptidase_C19 308..819 CDD:470612 110/605 (18%)
Usp47NP_523937.2 DUF4045 <122..249 CDD:433066 15/85 (18%)
peptidase_C19C 394..780 CDD:239124 76/411 (18%)
USP47_C 1300..1534 CDD:466158
Blue background indicates that the domain is not in the aligned region.

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