DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp1 and Usp10

DIOPT Version :9

Sequence 1:NP_001263061.1 Gene:Usp1 / 43462 FlyBaseID:FBgn0028476 Length:1078 Species:Drosophila melanogaster
Sequence 2:NP_001261229.1 Gene:Usp10 / 38103 FlyBaseID:FBgn0052479 Length:1517 Species:Drosophila melanogaster


Alignment Length:1236 Identity:236/1236 - (19%)
Similarity:390/1236 - (31%) Gaps:397/1236 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 EEPASL-------PPTQNETTEINSQLRQDQQNQEQ--------------------ENPLRQQDN 48
            |:||.|       |||.      ..|.:|.||:|||                    .|..:||.:
  Fly   502 EQPAQLVQAQPPQPPTP------TPQQQQQQQHQEQTADKSLTQNNNEVVALDEKLANEKQQQID 560

  Fly    49 SHPPQENPINQQEKDTLQVSVLYPLVVCAQLADSQLVLTADTPKLSPVKKRQRRVYVADTLRCYS 113
            .|..|:.. .||::...|...|:||....|..:.|     ...:|.|::..:....|.:.:....
  Fly   561 FHQQQQEQ-QQQQQQQQQQQQLHPLAQQQQQEEQQ-----QPQQLQPLQTEKPPTKVPNLVVATV 619

  Fly   114 LRSRQEPATKDPLEGGLKQ---PDVVPPPPPVQA-------------PSPTPTESTEYTP-PEQF 161
            ....|:|    ||:...:|   |.||.|....|.             |.|...:..:..| |::.
  Fly   620 APQLQQP----PLQQHQQQQTSPVVVSPKQQQQQSQAAHQNSYHDQHPLPQQQQPQQQQPQPQRK 680

  Fly   162 KSEFWNRIEEAQEPKPVGKKRRTPGGLKRTRGNKLLKELEIQSPETAAAIAAAQAELNAAGKSGA 226
            .|:.:|:.::.|      .:|:...............:..||:.:|.:...:||           
  Fly   681 PSQQYNQAQQQQ------VRRKYSSEYNHHHHQHGSSDTGIQTTKTMSWTNSAQ----------- 728

  Fly   227 AGARSSRKRTNTMSLYDRRFQTTTEERRVANGYGGNAARSVTGSSSNE--IESQEPQSHQYYGPN 289
                 .:|.|.::|:       |.....|.||.|..||.....|.:.:  ...|..|...|:..|
  Fly   729 -----HKKSTQSVSV-------TASPNSVNNGPGVGAAGKANYSHTTKTFTNQQHYQQQHYHTQN 781

  Fly   290 G-GSNAAGAGAGLNGSAAALNHAPSMGTLCNIGNSCYLNS-VVYTLRFAPHFLHNLHHLIQDLNV 352
            . .:|::|.|:..|.|:::.|:.|.:.   |.|.....:| |.:|   ||               
  Fly   782 SYNNNSSGGGSSSNSSSSSSNNQPQVR---NYGTMKMPSSPVAWT---AP--------------- 825

  Fly   353 VQQTIVRQ--QTARSASLGKNVSAAQLEHARSWSSKDLATST-DQYSGQNGGVNSGNGGSGSSKS 414
               |..|:  |.|.:|......|||.:......:|....|:| :|:..:.|   |.:.....:.:
  Fly   826 ---TPERKNSQQAAAAPAAATASAAPVAITTVTTSTASITATPNQFQPETG---SSSASPAVAAA 884

  Fly   415 THQSVTEKLHELYNNLHGNEMADSTEPYHADTLLHAIQDVNATFEGNQQQDAHEFLMCVLNCIRE 479
            ..|....:.|         ..|..|....|.:..|      :.:..:::..::|  ..||:.:..
  Fly   885 QQQQPAAQQH---------AQAAQTGAAAAPSKSH------SNYASSKKHQSYE--PVVLSSVVA 932

  Fly   480 TNQSLIKAIGECPEVIANGYIANPDEVDTGEGQDRTDSTASQNLNAGNGSLATSQTTTTKTS--- 541
            |:.|                 |||                ...||....:...||.::..:.   
  Fly   933 TSSS-----------------ANP----------------QPQLNLAPPAPPASQNSSDSSQLSW 964

  Fly   542 ---FFSRKSKRKDEVKPSKSTRV--QSP----LKENSPTAGGITGAG---------------TAH 582
               |.|.|...|  |.|.:::::  |.|    |:...|....:..|.               |||
  Fly   965 ASLFASNKPVAK--VAPYEASKIAQQQPSHPVLQLAPPQPAQVAAAAPVAQLSSPPQNLPLPTAH 1027

  Fly   583 ----------------ATANSLFYLNTVDLSGASSTSGSASTSASGVVSTSAALPTPPQATKYSS 631
                            .|..:|.|      |.||:.:..|.:.||  .|.....|.||:..:...
  Fly  1028 QQSQLPAPVPAPTAPLVTPGALSY------SAASAQAVPAPSPAS--ASVKPLKPEPPRPVQQQL 1084

  Fly   632 DDEMNSATVLKDKMRLEERIRELNLNFFSSDFEGIVVLTTKCLSCETITRQKQGMLDISVPVPIS 696
            |:                         ::|.:            .|.:||.|..:..||      
  Fly  1085 DE-------------------------WTSKY------------AEYLTRHKTNLASIS------ 1106

  Fly   697 GYDNADLQDKPSTYIQNSCITKEYFRGENKYSCNQCTGYTEAIRSI------------------- 742
                  |:.:..|...|.|......:     :...|:.:...:|||                   
  Fly  1107 ------LRPRGLTNRSNYCYINSILQ-----ALLGCSPFYNLLRSIPKQAAVLSEVKTPTVNAMM 1160

  Fly   743 ----SYEVLPRLLVIQLNRFSGGMEKVSTYVPTTFTLPCFCATCCELGEGNKLHVYKLY--SVIT 801
                ::..||..|.::||..:.|.:...........|.|..|.       ....:|||:  |...
  Fly  1161 SFMTNFSSLPSGLRLRLNNLNKGSQSKGKDDFVGSDLQCDMAF-------EPTEIYKLWNDSREE 1218

  Fly   802 HV-GATLTVGHYIAYTCFLDLASDYVNCPK--DRRNTMTNSQTMAS--------QAVPSNENAAP 855
            || |.......::.|. ...|..:.:...|  |:.....|.|..|.        |.:.:|.|...
  Fly  1219 HVEGRQEDAEEFLGYV-LNKLNDEMLEVIKLIDKPTPQQNGQEPAEPEDGGDVWQMICNNRNKGS 1282

  Fly   856 NNGSSSVASTPVIAAASALASSGNILMKKMKFGRSKASSSGDMSKNVKQVNGIISKNITNG---- 916
            ....:....|||          .:|...::   ||:....|:.|.:|.|....:..||...    
  Fly  1283 VTRQTDFGRTPV----------SDIFRGEL---RSRLQREGEHSTDVIQPFFTLQLNIEKAASVK 1334

  Fly   917 ------IGK-----LSISTTCQGVNCCAMRLCCTQQTSSS--------------NSTSCS----- 951
                  :|:     ::.|.|.|.|      :...|.|...              .|..|:     
  Fly  1335 EALEILVGRDQLEGVTGSKTKQEV------VAWQQMTLEKLPVVLILHLKYFDYRSDGCTKILKK 1393

  Fly   952 -DFSEE--------SLQNGSNSNLSFGGSGSTYPTGYGSTGRGGVRANYAHGGPDPIWYMCDDDK 1007
             ||..|        ..:..|....::......|..| ....:|....:..|.|... |...||..
  Fly  1394 VDFPVELKIDAKILGSKKTSQKQRAYRLFAVVYHDG-KEASKGHYITDVFHTGYSS-WLRYDDSS 1456

  Fly  1008 IKAMTQREFEELLSP-TRKITITPYLLFYARFDLQP--QKATPPMPGSSTTPPPPSSAQSSWSNE 1069
            :|.::::   .:|.| |.::   ||||:|.|.|..|  |:.|....|..:.....||:.||.:.:
  Fly  1457 VKPVSEK---HVLQPHTPRV---PYLLYYRRSDTLPPQQQQTQQQNGGGSGGVVGSSSSSSNAGD 1515

  Fly  1070 N 1070
            |
  Fly  1516 N 1516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp1NP_001263061.1 Peptidase_C19 308..819 CDD:271592 101/583 (17%)
Usp10NP_001261229.1 UCH 1109..1479 CDD:278850 74/409 (18%)
Peptidase_C19 1223..1480 CDD:239072 51/284 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456841
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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