DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp1 and Usp1

DIOPT Version :9

Sequence 1:NP_001263061.1 Gene:Usp1 / 43462 FlyBaseID:FBgn0028476 Length:1078 Species:Drosophila melanogaster
Sequence 2:NP_001288343.1 Gene:Usp1 / 230484 MGIID:2385198 Length:784 Species:Mus musculus


Alignment Length:898 Identity:206/898 - (22%)
Similarity:334/898 - (37%) Gaps:216/898 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 ARSSRKRTNTMSLYDRRFQTTTEERRVANGYGGNAARSVTGSSSNEIESQEPQSHQYYGPNGGSN 293
            :|.|..:.|.:||   :|....|.:|         |...|.|..||.::.|     |.|......
Mouse    13 SRGSPSKKNRLSL---KFFQKKETKR---------ALDFTDSQENEEKTSE-----YRGSEIDQV 60

  Fly   294 AAGAGAGLNGSAAALNHAPSMGTLCNIGNSCYLNSVVYTLRFAPHFLHNLHHLIQDLNVVQQTIV 358
            ...|.:.........|..|.:| |.|:||:|||||::..|.|.|.|...:.||   .|::.:   
Mouse    61 VPAAQSSPVSCEKRENLLPFVG-LNNLGNTCYLNSILQVLYFCPGFKTGVKHL---FNIISR--- 118

  Fly   359 RQQTARSASLGKNVSAAQLEHARSW----SSKDLATSTDQYSGQNGGVNSGNGGSGSSKSTHQSV 419
            :::..:..|..|:..:.:.|...|:    |.:.|..|.:|.             ..|.....:..
Mouse   119 KKEALKDDSNQKDKGSCKEESLASYELICSLQSLIISVEQL-------------QASFLLNPEKY 170

  Fly   420 TEKLHELYNNLHGNEMADSTEPYHADTLLHAIQDVNATFEGNQQQDAHEFLMCVLNCIRETNQSL 484
            |::|              :|:|..   ||:.::::|..:||..|.||.|.|.|:|..|:||.|.|
Mouse   171 TDEL--------------ATQPRR---LLNTLRELNPMYEGFLQHDAQEVLQCILGNIQETCQLL 218

  Fly   485 ----IKAIGECPEVIANGYIANPD-------EVDTGEGQDRTDSTASQNLNAGNGSLATSQTTTT 538
                ||.:.|....:....:...:       |:|:    .|......:.|..||          .
Mouse   219 KKEEIKNLAELSGKVEEQSLQKEETGGITSTEIDS----MRNTEDVKEQLPKGN----------W 269

  Fly   539 KTSFFSRKSKRKDEVKPSKSTRVQSPLKENS-PTAGGITGAGTAHATANSLFYLNTVDLSGASST 602
            |....|..|..|.:||.|:.::   ||:||. .|.......|.....|..:       :....|.
Mouse   270 KRKSDSESSNVKKKVKLSRESQ---PLEENQRQTRSKRKAIGDTLEAAPKI-------IPKCVSE 324

  Fly   603 SGSASTS-------------------------ASGVVSTSAALPTPPQ---------ATKYSSDD 633
            |.||..|                         :.|.::|:......|:         ..||.||.
Mouse   325 SESAKPSQKKSKVKINWLKPSTKQPSILSKFCSLGKITTNQRSKGQPKEKEGDVEEDLEKYGSDH 389

  Fly   634 EMN-------SATVLKDKMRLE---ERIRELNLNFFSSDFEGIVVLTTKCLSCETITRQKQGMLD 688
            ..|       |:....|....:   :...::........|:|.:||.|:||.||::|.:::...|
Mouse   390 TANGGPESPGSSVTPVDSSEAKSGNKGAEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQD 454

  Fly   689 ISVPVPISGY----DNADLQDKPSTYIQ------NSCITKEYFRGENKYSCNQCTGYTEAIRSIS 743
            |||||.....    :::::..:|.|.::      :...:.|...||:||.|..|..||||.||:.
Mouse   455 ISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLL 519

  Fly   744 YEVLPRLLVIQLNRFS----------GGMEKVSTYVPTTFTLPCFCATCCELGEGNKLHV---YK 795
            ::.:|.::.|.|..|:          ||:.|::|.:.|...|        .|.|.:....   |.
Mouse   520 FDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLKL--------SLEEWSTKPTNDSYG 576

  Fly   796 LYSVITHVGATLTVGHYIAYTCFLDLASDYVNCPKDRRNTMTNSQTMASQAVPSNENAAPNNGSS 860
            |::|:.|.|.|::.|||.|.....||.|    ...|..|.:.:......:..|..|..|  .|::
Mouse   577 LFAVVMHSGITISSGHYTASVKVTDLNS----LELDEGNFVVDQMCELGKPEPLTEEQA--RGTA 635

  Fly   861 SVASTPVIAAASALASSGNILMKKM-----KFGRSKASSSGDMSKNVKQVNGIISKNITNGIGKL 920
            ......|.......|....:|.||.     ..|..|:.:..::.......:.::....|:.....
Mouse   636 GNYDDEVSIRVGGNAQPSKVLNKKNVEGIGLLGGQKSKADYELYNKASNPDKVVGTPFTDNRNSE 700

  Fly   921 SISTTCQGVNCCAMRLCCTQQTSSSNSTSCSDFSEESL-QNGSNSNLSFGGSGSTYPTGYGSTGR 984
            :..||                    |.|..||.::||. |.|.|.|      |......|     
Mouse   701 TNDTT--------------------NGTHESDRNKESSDQTGVNMN------GLENKISY----- 734

  Fly   985 GGVRANYAHGGPDPIWYMCDDDKIKAMTQREFEELLSPTRKITITPYLLFYAR 1037
             .|::...:.|.   |.:.||.::|...:::|...|||:...|.|||||||.:
Mouse   735 -VVQSLKEYEGK---WLLFDDSEVKVTEEKDFLNSLSPSTSPTSTPYLLFYKK 783

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp1NP_001263061.1 Peptidase_C19 308..819 CDD:271592 140/593 (24%)
Usp1NP_001288343.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21 2/7 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 34..56 5/21 (24%)
Peptidase_C19 82..>253 CDD:271592 40/174 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 233..342 31/119 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 362..414 11/85 (13%)
Peptidase_C19O <423..598 CDD:239136 53/200 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 684..725 3/40 (8%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1864
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 132 1.000 Inparanoid score I4602
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto94539
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5721
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.950

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