DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp1 and duo-1

DIOPT Version :9

Sequence 1:NP_001263061.1 Gene:Usp1 / 43462 FlyBaseID:FBgn0028476 Length:1078 Species:Drosophila melanogaster
Sequence 2:NP_505931.3 Gene:duo-1 / 179586 WormBaseID:WBGene00001110 Length:877 Species:Caenorhabditis elegans


Alignment Length:873 Identity:160/873 - (18%)
Similarity:289/873 - (33%) Gaps:263/873 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 YTPP-EQFK----SEFWNRIEEAQEPKPVGKKRRTP----GGLKRTR--------GNKLLKELEI 202
            :||| :.|:    :||...|||.:......:.:|.|    |...||.        ..::|:|   
 Worm    82 FTPPHDAFRTWVVNEFNKFIEENKNSMQATQSKRPPSAASGSSSRTEKSSVRPIFNEQILRE--- 143

  Fly   203 QSPETAAAIAAAQAELNAAGKSGAAGAR--SSRKRTNTMSLYDR------RFQTTTEERR--VAN 257
             ..|.|..::...::   |.||....:|  |.:.|.:::.|.|:      .|.:..::|:  ..:
 Worm   144 -DHEKARQLSRPSSQ---ATKSSEVASRLSSDQGRESSIGLMDQMVASSDAFDSLKKDRKRSPVD 204

  Fly   258 GYGGNAARSVTGSSSNEIE-----SQEPQSHQYYGP--NGGSNAAGAGAGLNGSAAALNHAPSMG 315
            ....:|.:::....|.:|:     .::||:...:..  ....::..:.:.|..|...|.......
 Worm   205 ALQTSAPKTMKPKRSEDIKDEKQRDEKPQAETVFSEILEPAQSSKRSESPLLSSDVFLRKLHENR 269

  Fly   316 TLCNIGNSCYLNSVVYTLRFAPHFL---HNLHHLIQD--------LNVVQQTIVRQQTARSASLG 369
            .|.|.|||||.||.:..:......:   ..|:.:::|        :|..|..|.|:.......| 
 Worm   270 QLVNTGNSCYYNSTMQAVSSCNPLVIRCEQLYRMVRDNIELFDDSMNNDQADIKRKYIVLQNFL- 333

  Fly   370 KNVSAAQLEHARSWSSKDLATSTDQYSGQNGGVNSGNGGSGSSKSTHQSVTEKLHELYNNLHGNE 434
                  ::.....|          .::.:|.|               :|:..:.::|..      
 Worm   334 ------KVVICLGW----------HFNKRNEG---------------KSIELRRYDLLQ------ 361

  Fly   435 MADSTEPYHADTLLHAIQDVNATFEGNQQQDAHEFLMCVLNCIRETNQSLIKAIGECPEVIANGY 499
                   |..:     :..:|..|..:.||||||||:.::..:.:....:.|.:.....|   |.
 Worm   362 -------YRQN-----VGKINEEFNNDDQQDAHEFLLTLIGAVDDAMGVMSKNVKTIDNV---GI 411

  Fly   500 IANPD-----EVDT-------GEGQDRTDSTASQNLNAGNG-SLATSQTTTTKTSFFSRK-SKRK 550
            ..||.     :|:|       ...:.:.||.....::..:| |:....::..|.|...:: |..|
 Worm   412 TLNPARAFKIDVETMYVCQGCSNEELKVDSRNDLGVSVMDGCSVQKLVSSFVKWSPIEKECSSCK 476

  Fly   551 DEVKPS-------------------------------KSTRVQSPLKENSPTAGGITGAGTAHAT 584
            .::..|                               ||.||:...|.:..:.|...........
 Worm   477 HKISSSCERISTFPECLIINLKRYELEGQGPPFSMKKKSCRVEPSFKLDVSSLGNFPPVEHPEMF 541

  Fly   585 ANSLFY----LNTVDLSGASSTSGSASTSASGVVSTSAALPTPPQATKYSSDDEMNSATVLKDKM 645
            .|..:.    :|:.|...|..|:..|..:.|.|......          .:|:||:..:|:.:.:
 Worm   542 ENKEYSTTEPVNSEDSRLAEITTDDAHFNDSRVSGRLLG----------GADEEMSQCSVIVEDV 596

  Fly   646 RLEERIRELNLNFFSS--DFEGIV-------VLTTKCLSCET-ITRQKQGMLDISVPVPISG--- 697
            :   :.:||..|.||:  ||:.|:       ....|....|. ||.....|....:|....|   
 Worm   597 K---KRKELYFNIFSNEKDFDDILDEMGINNGENQKRFHFERHITGPPSKMYQFQLPGATRGITP 658

  Fly   698 ----------------------------------------YDNADLQDKPSTYIQNS------CI 716
                                                    |.:.::.:|   |::|:      ..
 Worm   659 DGNCFYRAISWWITGVQSHHMIFREAVGKHLKKNELMFKKYCHNEIYEK---YVENAMRDGVWAT 720

  Fly   717 TKEYFRGENKYSCNQCT-----GYTEAIRSISYEVLPRLLVIQLNRFSGGMEKVSTYVPTTF--- 773
            |.|.|...|..:....|     |:.......:|.  ||...|.|...:      ..|.|||.   
 Worm   721 TCEIFAMANMLNVEIITYLGDSGWVPHSPQNNYP--PRKGAIYLKNTN------MHYEPTTSLRK 777

  Fly   774 TLPCFCATCCELGEGNKLH----------------VYKLYSVITHVGATLTVGHYIAYTCFLDLA 822
            ..|.......|...|:.:|                .|.|.:|:.|:|.:...|||:|||..|...
 Worm   778 NSPERSPMKKENTNGSSMHDELDENDYLKSDIHPGTYSLVAVVCHLGDSPNKGHYVAYTKELYKN 842

  Fly   823 SDYVNCPKDRRNTMTNSQTMASQAVPSN 850
            |.::.|..|  |....|:...|:|:.|:
 Worm   843 SSWLRCSDD--NIYAVSKNDVSEAIRSS 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp1NP_001263061.1 Peptidase_C19 308..819 CDD:271592 116/653 (18%)
duo-1NP_505931.3 Peptidase_C19Q 270..875 CDD:239138 124/678 (18%)
OTU 657..>743 CDD:303090 9/88 (10%)
Peptidase_C19 <750..861 CDD:271592 30/120 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1864
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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