DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Brd8 and brd8

DIOPT Version :9

Sequence 1:NP_651685.2 Gene:Brd8 / 43460 FlyBaseID:FBgn0039654 Length:872 Species:Drosophila melanogaster
Sequence 2:XP_002936882.2 Gene:brd8 / 779589 XenbaseID:XB-GENE-967261 Length:934 Species:Xenopus tropicalis


Alignment Length:977 Identity:258/977 - (26%)
Similarity:412/977 - (42%) Gaps:199/977 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSAGVQERLQLSRMPLDTWSKREQLILASAVSCSGDQNWITVSRTLKTICGNGSSNRPADWFSQK 65
            |:||..:...|:..|.:.||.||:|.|||:|..||||||::|||.:|.....|   ||.||||||
 Frog     1 MAAGTGKHKLLNIGPTEPWSIREKLCLASSVMRSGDQNWVSVSRAIKPFAEPG---RPPDWFSQK 62

  Fly    66 NCAMQYGNLLESVEATKRKKRSSESSAGVSSPATVETPTELLLRRLTEERQAEIKAQMRQDQETY 130
            :||.||..|||:.|..|||:.....        .|||..::::|:||.||..|:|..:::.||.|
 Frog    63 HCASQYSELLETTETPKRKRGERGE--------VVETVEDVIVRKLTAERIEELKKMIKETQEKY 119

  Fly   131 RRIQREIESLQSDAVTEQELQDMWLE--IEKEQEARRIEEMKLENRMREREQRKKDLASNWRNSS 193
            |::::|.|.:||..: :.:|:|:|.|  .:|:||.   ||.:::.:..|...:.:..|.|....:
 Frog   120 RKLKKEAELIQSGHL-DSKLEDLWNETLAKKKQEE---EEAEMKRKATEAAYQVRLAAKNIPRRT 180

  Fly   194 LAVKRSNQAADTTSVDMDVEDINTSGNGKQQTGPSPLLTSLLKSPTG-NAPATPTPGGAAPAAGG 257
            ..:.||:..:.:...:..:.|:....|.:...|.|....|....||. ..|.||.|..|.|.:..
 Frog   181 STMSRSSVGSSSPGGEFGLVDLTPINNEEGSVGVSVGSLSSTSVPTFIGIPDTPPPASAPPESPL 245

  Fly   258 TGSV----------ARAT---APTITSLLTSGPSSAVANQP-VITMKSPTDA------------- 295
            |..:          .:||   :|.::.||..|  |.:.:.| ::....|.|.             
 Frog   246 TPVMDDSPQKKMAGQKATPPPSPLLSELLKKG--SLLPSSPRLVWNPDPGDRRECPETSHSNREE 308

  Fly   296 ----------AFMSRPI--------TGPPAS-----EASTTPTLE------------RSP-SQAA 324
                      :|.|..:        :|..|:     :....|||.            .|| :..|
 Frog   309 HLLGQNFLPYSFPSFQVSEGEMALTSGNSANSGVLMDVGVLPTLHGGDIHSVPGTIPASPAASGA 373

  Fly   325 PTLSMLLEKNMA-----------AAKANESGSLVKPEGSGNQEQGVDEAT-----------SSAA 367
            ||||.|||...|           ||..:.|.||:.|..|        :||           |...
 Frog   374 PTLSRLLEAGPAHFAAPHASFSTAANESPSKSLLAPIES--------QATIVMMSALPMTPSVPV 430

  Fly   368 GTADSDE--ADPNEAQLLEVFKNIDQIIDDIDIDMASVID------DEILKNVDDVVASPSNDKA 424
            ...||::  :||:...:.....:|..|||.|:.:..:..|      ||..:...|:..|...|..
 Frog   431 TQQDSNDSASDPHSISVSMDSSDISMIIDSINKECLASSDGVRQSKDETSEGKADLDLSEKMDME 495

  Fly   425 EVIDFEDKLDALKREQSKSSPASDKPK-----SVELVIGSSDDSNDNIPLAA----VASQESKDR 480
            | :|||...|.:...:.|    .|.|:     :||..:...::::|...||.    ...:.:.:|
 Frog   496 E-LDFETVGDIIAIIEDK----DDHPEVLDVAAVEAALSFCEENDDPQALAGPWDQPVQEHTSNR 555

  Fly   481 GQSGGESTRGTEDAESEPLTSEVAVEEIGETITIISTSSEDTAGSP-----PTKMEEDGATDSLP 540
            ...|.....|.:::||              .:.||..|.|..|..|     ||: ||..:..|.|
 Frog   556 DTLGQSLISGAKESES--------------LMNIIEMSHEIKAEPPEPDLEPTQ-EEAISLTSQP 605

  Fly   541 KKEDAAEDKSEQESSSQGQNKAGGSTDEPELIDHQATREAQSKSGKDTAGKPVTMQEKTTTQSAP 605
            ......||..||..:::.::.      :.|.:|...|.|              ...|...:|..|
 Frog   606 VYLGHTEDLKEQRGNTENEHV------KEEEVDQVKTEE--------------PYHEAPQSQVFP 650

  Fly   606 VPVDLHDTDEESSSLTDSSKHDDHPRSAKAKPPALKLALDDSKSELELSGTPQPPSAPARTPLLR 670
            ...:.....|::..:||:.|.:.||.|.. |....:...||..||   :|:|:.|.  ...|...
 Frog   651 KEEEAEMGIEQTPLVTDTVKSEPHPGSLH-KDSQEEEEEDDVTSE---AGSPEEPK--EEEPGEE 709

  Fly   671 KLPHRDRSESPMVDDDATTASDHSTARSTRRRCSSTPVIDSIPNSPASSEH---TDDRRETRAAS 732
            .|...| :|.|:.:.| ...|.|:.      :..|..:.||||:|||||:.   ::|:...:|..
 Frog   710 YLSEMD-NEPPISESD-DGLSIHNA------QLQSHTLADSIPSSPASSQFSVCSEDQEAIQAQK 766

  Fly   733 --KKLFLSIYAMLLDSKHAAPFKRPFHDEHAQRHADLCLRPMDFPTIKRNIDSGFIRSLSELHRD 795
              ||..:.::....:.::|..|.:|..|:.|..:..:..||||..|||:||::|.|||.:|..||
 Frog   767 IWKKAIMLVWRAAANHRYANVFLQPVTDDIAPGYHSIVHRPMDLSTIKKNIETGLIRSTAEFQRD 831

  Fly   796 VLLMAHN-VLVAYKPHTAQHKTARLFVQDCQAIKEF--SQL--PDVQAGITATPVSNTGSLRADK 855
            ::||..| |:.....|...|....:.....:.|::|  :||  ...::||:|..:....|.|...
 Frog   832 IMLMFQNAVMYNSSDHDVYHMAVEMQRDVLEQIQQFLATQLIMQTSESGISAKSLRFRDSTRKQD 896

  Fly   856 SS 857
            :|
 Frog   897 AS 898

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Brd8NP_651685.2 PaaSYMP <105..188 CDD:291408 26/84 (31%)
PHA03249 402..>582 CDD:223023 44/199 (22%)
Bromo_brd8_like 729..833 CDD:99939 32/108 (30%)
brd8XP_002936882.2 Bromo_brd8_like 765..868 CDD:99939 30/102 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 148 1.000 Domainoid score I4453
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 198 1.000 Inparanoid score I3685
OMA 1 1.010 - - QHG46231
OrthoDB 1 1.010 - - D1509761at2759
OrthoFinder 1 1.000 - - FOG0004061
OrthoInspector 1 1.000 - - oto103297
Panther 1 1.100 - - LDO PTHR15398
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5330
SonicParanoid 1 1.000 - - X5075
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.200

Return to query results.
Submit another query.