DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Brd8 and Brd3

DIOPT Version :9

Sequence 1:NP_651685.2 Gene:Brd8 / 43460 FlyBaseID:FBgn0039654 Length:872 Species:Drosophila melanogaster
Sequence 2:NP_001107046.1 Gene:Brd3 / 67382 MGIID:1914632 Length:743 Species:Mus musculus


Alignment Length:566 Identity:116/566 - (20%)
Similarity:193/566 - (34%) Gaps:132/566 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 APATPTPGGAAPAAGGTGSVARATAPTITSLLTSGPSSAVA-----NQPVITMKSPTDAAFMSRP 301
            :||||.. ...|....|..:|....||||:.:||.|....|     ..|::.:..||......:.
Mouse   177 SPATPFQ-NIPPTVSQTPVIAATPVPTITANVTSVPVPPPAAPPPPATPIVPVVPPTPPVVKKKG 240

  Fly   302 ITGPPASEASTTPTLERSPSQAAPTLSMLLEKNMA--AAKANESGSLVKP------EGSGNQEQG 358
            :.....:...||..:..|.|::.|.||   |...|  .|:....|..:||      :|...|..|
Mouse   241 VKRKADTTTPTTSAITASRSESPPPLS---EPKQAKVVARRESGGRPIKPPKKDLEDGEVPQHAG 302

  Fly   359 VDEATSSAAGTADSDEAD---------------PNEAQLLEVFKNIDQIIDDIDIDMASVIDDEI 408
            .....|......||...:               |.:|:.||:....|.|...:|:       ..:
Mouse   303 KKGKLSEHLRHCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDL-------STV 360

  Fly   409 LKNVD------------DVVASPSN------DKAEVIDFEDKLD-------ALKREQSKSSPASD 448
            .:.:|            |:....||      ...||:....||.       |...::...:||..
Mouse   361 KRKMDSREYPDAQGFAADIRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPMEAPALP 425

  Fly   449 KPKSVELVIGSSDDSNDNIPLAAVASQESKDRGQSGGESTRGTEDAESEPLT------------S 501
            .| :..:|...::.|..       :.:.|.|.|.|..|..|.|..||.:..|            |
Mouse   426 AP-TAPIVSKGAESSRS-------SEESSSDSGSSDSEEERATRLAELQEQTGCGAFQDQLLNVS 482

  Fly   502 EVAVEEIGETITIISTSSEDTAGSPPTKMEEDGATDSLPKKEDAAEDKSEQESSSQGQNKAGGST 566
            .|.::.:.|.:..:|.:..    :.|.|.:|....:...|.:|..::|.:.::.|:.:.||..: 
Mouse   483 SVQLKAVHEQLAALSQAPV----NKPKKKKEKKEKEKKKKDKDKDKEKEKHKAKSEEEKKAKAA- 542

  Fly   567 DEPELIDHQATREAQSKSGKDTAGKPVTMQEKTTTQSAPVPVDLHDTDEESSSLTDSSKHDDHPR 631
                    .|.::||.|..      |......|||.|.    .|....:::|:..||.:.::   
Mouse   543 --------PAAKQAQQKKA------PTKKANSTTTASR----QLKKGGKQASASYDSEEEEE--- 586

  Fly   632 SAKAKPPALKLALDDSKSELELSGTPQPPSAPARTPLLRKLPHRDRSESPMVDDD--ATTASDHS 694
                   .|.::.|: |.:|.|.....|...      |.::.|..:|..|.:.|.  .....|..
Mouse   587 -------GLPMSYDE-KRQLSLDINRLPGEK------LGRVVHIIQSREPSLRDSNPDEIEIDFE 637

  Fly   695 TARSTRRRCSSTPVIDSI------PNSPASSEHTDDRRETRAASKK 734
            |.:.|..|.....|...:      |.|.:..:.....:|..|..||
Mouse   638 TLKPTTLRELERYVKSCLQKKQRKPLSTSGKKQAAKSKEELAQEKK 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Brd8NP_651685.2 PaaSYMP <105..188 CDD:291408
PHA03249 402..>582 CDD:223023 39/216 (18%)
Bromo_brd8_like 729..833 CDD:99939 3/6 (50%)
Brd3NP_001107046.1 Bromo_Brdt_I_like 33..139 CDD:99929
Bromo_Brdt_II_like 310..411 CDD:99930 17/107 (16%)
BET 589..653 CDD:374956 15/70 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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