DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Brd8 and Acf

DIOPT Version :9

Sequence 1:NP_651685.2 Gene:Brd8 / 43460 FlyBaseID:FBgn0039654 Length:872 Species:Drosophila melanogaster
Sequence 2:NP_536734.2 Gene:Acf / 43751 FlyBaseID:FBgn0027620 Length:1476 Species:Drosophila melanogaster


Alignment Length:833 Identity:160/833 - (19%)
Similarity:279/833 - (33%) Gaps:207/833 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 YGNLLESVEATKRKKRSSESSA-------GVSSPATVET-----PTELLLRRLTEERQAEIKAQM 123
            ||:  :..:..|:.|.|.|:..       |.:.|..||:     ||...|...:.::::.|....
  Fly   705 YGD--DEKKTKKKAKHSLENKENQEHRLNGSAEPMDVESDSPEAPTHFELLMCSGDKRSCIVHDS 767

  Fly   124 RQDQE-----TYR--RIQREIESLQSDAVTE----QELQDMWLEIEKEQEARRIEEMKLENRMRE 177
            |..|.     .|:  .|...|::|..:.:.|    |||..:...||:..:...::.:.|||    
  Fly   768 RNGQRQRWAYIYKAEEIDELIKALNPNGLREYELLQELSVLRSLIEQHAKTCPVDLLSLEN---- 828

  Fly   178 REQRKKDLAS-------NWRNSSLAVKRS---NQAADTTSVDMDVE---DINTSGNGK-----QQ 224
            ...|||.:|:       .:..::..:...   |:......||..::   ||.|...|:     .:
  Fly   829 ETMRKKFMAAMESETNRKYGEANFGLPNGTDLNEVMRLHLVDRIIQFENDIYTGDLGRLKVKDME 893

  Fly   225 TGPSPLLTSLLKSPTGNAPATPT----PGGAAPAAGGTGSVARATAPTITSLLTSGPSSAVANQP 285
            ...|.||       .||..|...    |||......|:.:.:..|                    
  Fly   894 KWRSDLL-------GGNYDAQCKLQWGPGGKLEDEAGSDNESHET-------------------- 931

  Fly   286 VITMKSPTDAAFMS----RPITGPP---ASEASTTPTLERSPSQAAPTLSM---LLEKNMAAA-- 338
                ....|.|.:.    :|...|.   |:.|.|.|..:....:...|.::   :...|||:|  
  Fly   932 ----HEEDDGALLGKYARKPYRDPGMYLAASADTKPLPDSDDEEDQHTNAVSIPIAVHNMASALL 992

  Fly   339 ---KANESGSLVKPEGSGNQEQGVDEATSSAAGTADSDEADPNEAQLLE------VFKNIDQIID 394
               :|.....|.:|.|....     :....|...|........|..|:|      ||.:::.:.|
  Fly   993 QVEQAIGKRFLKEPYGMKKW-----DPKQEALKLACDSRLHQWEVSLMESTSFAQVFLHLNILHD 1052

  Fly   395 DIDIDMASVIDDEILKNVDDVVASPSNDKAEVIDFEDKLDA------LKREQSKSSP----ASDK 449
            .|....::  :..:.|     |....:|..::: ..|:.:|      ||.:.....|    .:|.
  Fly  1053 CIQWRRST--NKSLCK-----VCRRGSDPEKML-LCDECNAGTHMFCLKPKLRSVPPGNWYCNDC 1109

  Fly   450 PKSVELVIGSSDDSNDNIPLAAVASQESKDRGQSGGESTRGTEDAESEPLTSEVAVEEIGETITI 514
            .||:.|..|                |..||:.|:..:..:...:.|.:..|.|...|:..:.:| 
  Fly  1110 VKSLGLSNG----------------QNEKDKKQATKKKRKFIVEEEDDEATDEEEEEKKDDDMT- 1157

  Fly   515 ISTSSEDTAGSPPTKMEEDGATDSLPKKEDAAEDKSEQESSSQGQNKAGGSTDEPELIDHQATRE 579
                            :||...::....||..:|  |..:|:...::..|     .::....||.
  Fly  1158 ----------------DEDAEHENEKHDEDVEDD--ESVTSTPSSSRVNG-----RILRRPRTRP 1199

  Fly   580 AQSKSGKDTAGKPVTMQEKTTTQSAPVPVDLHDTDEESSSLTDSSKHDDHPRSAKAKPPALKLAL 644
            ...:           :..|...:.|...||..|..:::|........:|.....|.   ..|...
  Fly  1200 TSRR-----------LTSKEIEEHAQEDVDSGDVSDDASLTAGEDTIEDESDEEKV---CQKCFY 1250

  Fly   645 DDSKSE---------LELSGTPQPPSAPARTPLLRKLPHRDRSESPMVDDDATTASDHSTARSTR 700
            |..:.:         ||.....:||.........:.:|.|.|.....::.|..  .|....::.|
  Fly  1251 DGGEIKCVQCRLFFHLECVHLKRPPRTDFVCKTCKPMPQRPRRRHSNMNGDHD--RDEEEPKAKR 1313

  Fly   701 RRCSSTPVIDSIP----------NSPASSEHTDDRRETRAASKKLFLSIYAM--LLDS--KHAA- 750
            .|.|....||...          |:.:|..:.:.||..|..::.:.|:..|:  ||:.  ||.| 
  Fly  1314 PRNSLRLSIDKTARPSNGNNNNNNNNSSVNNNNHRRSGRRTNEHMPLNSAALYDLLEQIMKHKAA 1378

  Fly   751 -PFKRPFHDEHAQRHADLCLRPMDFPTIKRNIDSGFIRSLSELHRDVLLMAHN 802
             ||.||........:..:...|||...||..::.|..:...||..|:.|:..|
  Fly  1379 WPFLRPVLTSEVPDYHQIIKTPMDLAKIKSKLNMGAYQLNEELLSDIQLVFRN 1431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Brd8NP_651685.2 PaaSYMP <105..188 CDD:291408 21/100 (21%)
PHA03249 402..>582 CDD:223023 32/189 (17%)
Bromo_brd8_like 729..833 CDD:99939 23/80 (29%)
AcfNP_536734.2 WAC_Acf1_DNA_bd 26..125 CDD:287503
DDT 346..411 CDD:214726
WHIM1 505..554 CDD:292246
WHIM2 637..666 CDD:292247
WHIM3 775..813 CDD:292248 8/37 (22%)
PHD_RSF1 1064..1109 CDD:277018 8/50 (16%)
PHD 1244..1284 CDD:214584 6/42 (14%)
Bromo_Acf1_like 1349..1463 CDD:99936 24/83 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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