DRSC/TRiP Functional Genomics Resources

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Protein Alignment Brd8 and Brd4

DIOPT Version :9

Sequence 1:NP_651685.2 Gene:Brd8 / 43460 FlyBaseID:FBgn0039654 Length:872 Species:Drosophila melanogaster
Sequence 2:NP_001094373.1 Gene:Brd4 / 362844 RGDID:1307282 Length:1403 Species:Rattus norvegicus


Alignment Length:360 Identity:85/360 - (23%)
Similarity:136/360 - (37%) Gaps:72/360 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   566 TDEPELIDHQATREAQSKSGKDTAGKPVTMQEKTTTQSAPVPVDLHDTDEESSSLTDSSKHDDHP 630
            |:|.|::..||....:.:....|| ||.......|||::..|    .|.....:.....:...||
  Rat   166 TEETEIMIVQAKGRGRGRKETGTA-KPGVSTVPNTTQASTSP----QTQMPQQNPPPPVQATTHP 225

  Fly   631 RSAK-----AKPPALKLALDDSKSELELSGTPQPPSAPA--------RTPLLRKLPH-------- 674
            ..|.     |:||.:.: :.....:......||||..||        ..|::...|.        
  Rat   226 FPAVTPDLIAQPPVMTM-VPPQPLQTPSPVPPQPPPPPAPVPQPVQSHPPIIATTPQPVKTKKGV 289

  Fly   675 ---RDRSESPMVD---DDATTASDHSTARSTRRRCSSTPVIDSIPNSPASSEHTDDRRETRAASK 733
               .|.:....:|   :..:.|.:..||:...||.||.||.....:.|.|.:|....:.::.:.:
  Rat   290 KRKADTTTPTTIDPIHEPPSLAPEPKTAKLGPRRESSRPVKPPKKDVPDSQQHPGPEKSSKISEQ 354

  Fly   734 -KLFLSIYAMLLDSKHAA---PFKRP-------FHDEHAQRHADLCLRPMDFPTIKRNIDSGFIR 787
             |....|...:...||||   ||.:|       .||     :.|:...|||..|||..::|...|
  Rat   355 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHD-----YCDIIKHPMDMSTIKSKLESREYR 414

  Fly   788 SLSELHRDVLLMAHNVLVAYKPHTAQHKTARLF--VQDCQAIKEFSQLPD--------------- 835
            ...|...||.||..|   .||.:...|:...:.  :||...:: |:::||               
  Rat   415 DAQEFGADVRLMFSN---CYKYNPPDHEVVAMARKLQDVFEMR-FAKMPDEPEEPVVTVSSPAVP 475

  Fly   836 VQAGITATPVSNTGSLRADKSSGSKARSGSRKSQR 870
            ....:.|.|.|:..|  :|.||.|.:.:...:.:|
  Rat   476 PPTKVVAPPSSSDSS--SDSSSDSDSSTDDSEEER 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Brd8NP_651685.2 PaaSYMP <105..188 CDD:291408
PHA03249 402..>582 CDD:223023 5/15 (33%)
Bromo_brd8_like 729..833 CDD:99939 32/116 (28%)
Brd4NP_001094373.1 Bromo_Brdt_I_like 58..164 CDD:99929
Bromo_Brdt_II_like 354..455 CDD:99930 31/109 (28%)
BET 610..674 CDD:293640
BRD4_CDT 1361..1403 CDD:293710
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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