DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Brd8 and Brd3

DIOPT Version :9

Sequence 1:NP_651685.2 Gene:Brd8 / 43460 FlyBaseID:FBgn0039654 Length:872 Species:Drosophila melanogaster
Sequence 2:XP_006233887.1 Gene:Brd3 / 362092 RGDID:1308925 Length:742 Species:Rattus norvegicus


Alignment Length:593 Identity:120/593 - (20%)
Similarity:198/593 - (33%) Gaps:156/593 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 GKQQTG------PSPLLTSLLKSPTGNAPATPTPGGAAPAAGGTGSVARATAPTITSLLTSGPSS 279
            |.||.|      |:|        |..|.|         |....|..:|....||||:.:||.|..
  Rat   167 GAQQMGAVSSVSPAP--------PFQNIP---------PTVSQTPVIAATPVPTITANVTSVPVP 214

  Fly   280 AVA-----NQPVITMKSPTDAAFMSRPITGPPASEASTTPTLERSPSQAAPTLSMLLEKNMA--A 337
            ..|     ..|::.:..||......:.:.....:...||..:..|.|::.|.||   |...|  .
  Rat   215 PPAAPPPPATPIVPVVPPTPPVVKKKGVKRKADTTTPTTSAITASRSESPPPLS---EPKQAKVV 276

  Fly   338 AKANESGSLVKP------EGSGNQEQGVDEATSSAAGTADSDEAD---------------PNEAQ 381
            |:....|..:||      :|...|..|.....|......||...:               |.:|:
  Rat   277 ARRESGGRPIKPPKKDLEDGEVPQHAGKKGKLSEHLRHCDSILREMLSKKHAAYAWPFYKPVDAE 341

  Fly   382 LLEVFKNIDQIIDDIDIDMASVIDDEILKNVD------------DVVASPSN------DKAEVID 428
            .||:....|.|...:|:       ..:.:.:|            |:....||      ...||:.
  Rat   342 ALELHDYHDIIKHPMDL-------STVKRKMDSREYPDAQGFAADIRLMFSNCYKYNPPDHEVVA 399

  Fly   429 FEDKLDALKREQSKSSPASDKPKSVEL-------VIGSSDDSNDNIPLAAVASQESKDRGQSGGE 486
            ...||..:...:....|  |:|..|..       ::....:|:.:      :.:.|.|.|.|..|
  Rat   400 MARKLQDVFEMRFAKMP--DEPMEVPALPAPTAPIVSKGAESSRS------SEESSSDSGSSDSE 456

  Fly   487 STRGTEDAESEPLT------------SEVAVEEIGETITIISTSSEDTAGSPPTKMEEDGATDSL 539
            ..|.|..||.:..|            |.|.::.:.|.:..:|.:..:.......|.|::      
  Rat   457 EERATRLAELQEQTGCGAFQDQLLNVSSVQLKAVHEQLAALSQAPVNKPKKKKEKKEKE------ 515

  Fly   540 PKKEDAAEDKSEQESSSQGQNKAGGSTDEPELIDHQATREAQSKSGKDTAGKPVTMQEKTTTQSA 604
            .||:|..::|.:.::.|:.:.||..:         .|.::||.|..      |......|||.|.
  Rat   516 KKKKDKEKEKEKHKAKSEEEKKAKAA---------PAAKQAQQKKA------PTKKANSTTTASR 565

  Fly   605 PVPVDLHDTDEESSSLTDSSKHDDHPRSAKAKPPALKLALDDSKSELELSGTPQPPSAPARTPLL 669
                .|....:::|:..||.:.::          .|.::.|: |.:|.|.....|...      |
  Rat   566 ----QLKKGGKQASASYDSEEEEE----------GLPMSYDE-KRQLSLDINRLPGEK------L 609

  Fly   670 RKLPHRDRSESPMVDDD--ATTASDHSTARSTRRRCSSTPVIDSI------PNSPASSEHTDDRR 726
            .::.|..:|..|.:.|.  .....|..|.:.|..|.....|...:      |.|.:..:.....:
  Rat   610 GRVVHIIQSREPSLRDSNPDEIEIDFETLKPTTLRELERYVKSCLQKKQRKPLSTSGKKQAAKSK 674

  Fly   727 ETRAASKK 734
            |..|..||
  Rat   675 EELAQEKK 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Brd8NP_651685.2 PaaSYMP <105..188 CDD:291408
PHA03249 402..>582 CDD:223023 38/216 (18%)
Bromo_brd8_like 729..833 CDD:99939 3/6 (50%)
Brd3XP_006233887.1 Bromo_Brdt_I_like 34..140 CDD:99929
Bromo_Brdt_II_like 311..412 CDD:99930 17/107 (16%)
BET 588..652 CDD:407211 15/70 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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