DRSC/TRiP Functional Genomics Resources

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Protein Alignment Brd8 and brd2

DIOPT Version :9

Sequence 1:NP_651685.2 Gene:Brd8 / 43460 FlyBaseID:FBgn0039654 Length:872 Species:Drosophila melanogaster
Sequence 2:XP_012809277.2 Gene:brd2 / 100038037 XenbaseID:XB-GENE-481598 Length:778 Species:Xenopus tropicalis


Alignment Length:717 Identity:147/717 - (20%)
Similarity:232/717 - (32%) Gaps:263/717 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 ARRIEEMKLEN--RMREREQRKKDLASNWRNSSLAVKRSNQAADTTSVDMDVEDINTSGNGKQQT 225
            |:.:|:|.|:.  :|.:.||...:.||..:|..::                    .|||      
 Frog   166 AQSLEKMFLQKVAQMPQEEQEIPNTASKIKNVKIS--------------------KTSG------ 204

  Fly   226 GPSPLLTSLLKSPTGNAPATPTPGGAAPAAGGTGSVARATAPTITSLLTSGPSSAVANQPVITMK 290
                        |||..    |.....||.....|:..::....|::|:...||.::| ||  :|
 Frog   205 ------------PTGGV----TTAHQVPAVSSQSSLYPSSPEVPTTMLSLAHSSIISN-PV--LK 250

  Fly   291 S-PTDAAFMS------RPIT---GPPASEASTTPTL--------ERSPSQAAPTLSMLLEKNMAA 337
            | |:..|.:|      :|:.   |......:||||.        :.||.||:.|      |....
 Frog   251 SMPSSQAVLSVLPGATQPVAKKKGVKRKADTTTPTTTAIIATSGDLSPLQASET------KPAKI 309

  Fly   338 AKANESGSLVKP---------EGSGNQEQGVDEATSSAAGTADSDEADPNEAQLLEVFKNID--- 390
            ....|||..:||         :...:::..:.|......|......:..:.|.....:|.:|   
 Frog   310 PARRESGRPIKPPKKDLPDSQQHQTSKKGKLSEQLKYCNGILKELLSKKHAAYAWPFYKPVDVSA 374

  Fly   391 -QIIDDIDI-----DMASV---IDDEILKNVDDVVAS-------------PSNDKAEVIDFEDKL 433
             .:.|..||     |::::   :|:...|:..:..|:             |.:|   |:....||
 Frog   375 LGLHDYYDIIKHPMDLSTIKKKMDNREFKDAQEFAAAVRLMFSNCYKYNPPDHD---VVAMARKL 436

  Fly   434 DALKREQSKSSPASDKPKSVELVIGSSDDSNDNIPLAAVASQESKDRGQSGGESTRGTEDAESEP 498
            ..:...:....|  |:|    ||:.....|:...|..:.:|.||     |...|:..::|:||..
 Frog   437 QDVFEFRYAKMP--DEP----LVVNPPSTSSQLPPSDSKSSSES-----SSESSSESSDDSESSD 490

  Fly   499 LTSEVAVEEIGETITIISTSSEDTAG------SPPTKMEE-----DGATDSLPKKEDA--AEDKS 550
            .:.|.....:.|....:....|..|.      |.|.|..|     ...:|...:|:|.  ...||
 Frog   491 DSEEERANRLAELQEQLRAVHEQLAALSQGPISKPKKKREKKEKKKKKSDKKKRKDDDEWRSSKS 555

  Fly   551 EQESSSQGQNKAGG-----STDEPELIDHQATREAQSKSGKDTAGKPVTMQEKTTTQSAPVPVDL 610
            :...:.:...|:||     ||..|          |.|||.|           ||.....|.|..|
 Frog   556 KPSQAKKSSKKSGGGIATSSTVSP----------AISKSTK-----------KTFKSVPPAPSVL 599

  Fly   611 HDTDEESSS--LT-----------------------------DSSKHDDHP-------------- 630
            :|::||..|  :|                             :.|..|.:|              
 Frog   600 YDSEEEEESKPMTYDEKRQLSLDINKLPGEKLGRVVHIIQSREPSLRDSNPEEIEIDFETLKPST 664

  Fly   631 ------------RSAKAKP---------PALKLALDDSKSEL-----------------ELSGTP 657
                        |....||         ||||..:..:|.|:                 :|:...
 Frog   665 LRELERYVMSCLRKKPRKPYTPPNSVLSPALKKPVGKTKEEIALEKKRELEKRLQDVSGQLNSAK 729

  Fly   658 QPPSAPARTPLLRKLPHRDRSESPMVDDDATTASDHSTARSTRRRCSSTPVIDSIPNSPASSEHT 722
            :||          |.||          |.|.:|...|..|.:....||..  ||..:|.:||..|
 Frog   730 KPP----------KKPH----------DKAESAQQVSVTRLSASSSSSDS--DSSSSSTSSSSDT 772

  Fly   723 DD 724
            .|
 Frog   773 SD 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Brd8NP_651685.2 PaaSYMP <105..188 CDD:291408 8/26 (31%)
PHA03249 402..>582 CDD:223023 43/213 (20%)
Bromo_brd8_like 729..833 CDD:99939
brd2XP_012809277.2 Bromo_Brdt_I_like 74..180 CDD:99929 4/13 (31%)
Bromo_Brdt_II_like 343..444 CDD:99930 16/103 (16%)
BET 610..674 CDD:407211 4/63 (6%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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