DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mesh1 and Hddc3

DIOPT Version :9

Sequence 1:NP_651682.1 Gene:Mesh1 / 43456 FlyBaseID:FBgn0039650 Length:179 Species:Drosophila melanogaster
Sequence 2:NP_001100998.1 Gene:Hddc3 / 308758 RGDID:1311839 Length:179 Species:Rattus norvegicus


Alignment Length:173 Identity:101/173 - (58%)
Similarity:123/173 - (71%) Gaps:0/173 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDA 70
            :|:.:|...:||.||||||||||:.|||:||.|.|:.||:.||.|||..||.||||||.|||||.
  Rat     5 AAQLLEAADFAAQKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDT 69

  Fly    71 SFEDVEKLFGPDVCGLVREVTDDKSLEKQERKRLQIENAAKSSCRAKLIKLADKLDNLRDLQVNT 135
            :.::||..||..|..||.||||||:|.|.||||.|:|.|..||..|||:||||||.|||||...|
  Rat    70 TLDEVELHFGAQVRRLVEEVTDDKTLPKLERKRQQVEQAPHSSPGAKLVKLADKLHNLRDLNRCT 134

  Fly   136 PTGWTQERRDQYFVWAKKVVDNLRGTNANLELKLDEIFRQRGL 178
            |.||::.|..:||.||.:||..|:|||..||..|.::|.:|||
  Rat   135 PKGWSEHRVQEYFEWAAQVVKGLQGTNQQLEEALKQLFEERGL 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mesh1NP_651682.1 SpoT 13..>147 CDD:223394 82/133 (62%)
HD_4 13..136 CDD:290067 77/122 (63%)
Hddc3NP_001100998.1 SpoT 4..>130 CDD:223394 77/124 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351330
Domainoid 1 1.000 152 1.000 Domainoid score I4241
eggNOG 1 0.900 - - E1_COG0317
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H12279
Inparanoid 1 1.050 192 1.000 Inparanoid score I3775
OMA 1 1.010 - - QHG63160
OrthoDB 1 1.010 - - D1372331at2759
OrthoFinder 1 1.000 - - FOG0002754
OrthoInspector 1 1.000 - - oto97884
orthoMCL 1 0.900 - - OOG6_101946
Panther 1 1.100 - - LDO PTHR46246
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4722
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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