DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11898 and pmp-4

DIOPT Version :9

Sequence 1:NP_651679.2 Gene:CG11898 / 43451 FlyBaseID:FBgn0039645 Length:1320 Species:Drosophila melanogaster
Sequence 2:NP_001293680.1 Gene:pmp-4 / 24104835 WormBaseID:WBGene00004061 Length:734 Species:Caenorhabditis elegans


Alignment Length:733 Identity:143/733 - (19%)
Similarity:258/733 - (35%) Gaps:239/733 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 LESTQVSSFLLGHWEQELKRSKPNVLRMIFKAYGWSFV--PASIVYSIMAIAVHTTQPLMLGGLV 113
            ||.:.|.:.:           :.|||:.:.....|..|  ||:.|.|                ::
 Worm   116 LEGSMVQAIV-----------EKNVLQFVLHLVKWILVALPATFVNS----------------MI 153

  Fly   114 SFFSESTG-----KITKHSAYLYAMGVVLCSLISGLFFHPFMKYLFRVGSRVRLACAGLVYRKFL 173
            .||....|     ::|||:                                         |:::.
 Worm   154 RFFESYLGLAFRTRLTKHA-----------------------------------------YKQYF 177

  Fly   174 RVSVAADNSGVSGYAISLMAT-----------DLPTFNESF-YCFHELWRGPLEGVVFVYIIYQL 226
                    |..:.||:|.:.|           |:..|::|. :.:..|.:..|:..:..:.:.:|
 Worm   178 --------SDQTYYAVSNLDTRLQNADQCLTEDITMFSQSVAHLYSHLTKPVLDVALITFTLIKL 234

  Fly   227 IGWPAVVGLGT----------IVAFIPLQAWAARAIA-RYKRSSADVGDERVK-----LMNEIIA 275
                 .:..||          .:..:.|.|...||:: |:....|:  :.|.|     |.:.||.
 Worm   235 -----AIQRGTGRSTFLPSCMAIMAVSLTAKILRAVSPRFGHMVAE--EARRKGHLRYLHSRIIT 292

  Fly   276 AMQLIKMYAWEKSFAKLIGKVRKEEMDSIRGSTYIYAGLQCTGMISKLSLFLSLVTYVFTG-DIV 339
            ..:.|..|...::..|        ::|....|.|....|.....|..:.:...|:.||::| .:|
 Worm   293 NSEEIAFYGGHQAEYK--------QLDGAFNSLYQQMMLIFKKRIPYIMIEQFLMKYVWSGTGMV 349

  Fly   340 TSQKVFIVASYYDHLNDSLLHSWP-LAINMWVETFVVANRVKDFLFQHENPADGGVHNFKEAEDN 403
            ......:...|.|....:.|...| ..::.....:..|   |..||...:..:..:.::||.   
 Worm   350 MIALPILATEYADDEKSTKLEDLPDRGVSERTRGYATA---KTLLFNSADAVERLMTSYKEV--- 408

  Fly   404 PEHGNFFGRTHK--------PKAEVKSITVHKLSASWDQKKQEKRH--RHIEDVSFQAQDQQF-- 456
            .|...:.||.|:        .|...:..||   ||..:|.::.:|.  ..||.:...::..:.  
 Worm   409 TELAGYTGRVHEMFQVFDDAKKGIYQRQTV---SAGAEQGQRGERFDTSKIEGIITDSEADEIIL 470

  Fly   457 --------------------------VGIVGTVGAGKSTLLQVILGELDIISGSVE--VNGVLSY 493
                                      |.|.|..|.|||:|.:::.|...:..|.:|  .:..:.|
 Worm   471 NSVPIVTPNGDVVVKNMTLTISPGMHVLITGPNGCGKSSLFRILGGLWPVYRGHLEKPTSDRMYY 535

  Fly   494 APQEPWLLRGSLRDNILFTEP--------YDEQRYLEVLRVCHLDRDVEQLPLGDSTRVGEGGAS 550
            .||.|::..|:|||.:::.:.        ..:|..:.:||:.||:..||:          |||..
 Worm   536 IPQRPYMTLGTLRDQVIYPDTTIQMRRQGITDQDLMTMLRIVHLEHIVER----------EGGWD 590

  Fly   551 --------LSGGQKARVSLARAVYRKADIYLLDDPLSAVDSHVSKMLLDRCLNEFLSKKIRILVT 607
                    ||||:|.|:.:||..|.:....|||:..|||...|...:.....:..::   .:.||
 Worm   591 AQNDWMDVLSGGEKQRMGMARVFYHRPKYALLDECTSAVSIDVEGSIYQAIKDSGIT---LLTVT 652

  Fly   608 HRVQLLRHVDHLVLLEGGRISVQGHYDALKKLIRFRMSVANDVEVAKLRAMRTDSVYEEPEPRKS 672
            ||..|.:...||:..:|     :|.|         ::|..|:..:.:               |.|
 Worm   653 HRPSLWKFHTHLLQYDG-----EGGY---------KVSSLNEKTIGE---------------RMS 688

  Fly   673 LSQEEHMDRHEIEQQFKE 690
            .|:|    :.::|:|..|
 Worm   689 YSEE----KQQLEKQLAE 702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11898NP_651679.2 CFTR_protein 9..1268 CDD:273530 143/733 (20%)
ABC_membrane 92..358 CDD:294371 48/299 (16%)
ABCC_MRP_domain1 423..626 CDD:213217 61/250 (24%)
ABC_membrane 762..988 CDD:294371
ABCC_MRP_domain2 1042..1261 CDD:213211
pmp-4NP_001293680.1 3a01203 37..674 CDD:273360 134/684 (20%)
ABC_membrane_2 69..356 CDD:284003 56/330 (17%)
ABCD_peroxisomal_ALDP 468..673 CDD:213190 54/222 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S1117
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.860

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