DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11898 and haf-4

DIOPT Version :9

Sequence 1:NP_651679.2 Gene:CG11898 / 43451 FlyBaseID:FBgn0039645 Length:1320 Species:Drosophila melanogaster
Sequence 2:NP_001021666.1 Gene:haf-4 / 171639 WormBaseID:WBGene00001814 Length:787 Species:Caenorhabditis elegans


Alignment Length:607 Identity:157/607 - (25%)
Similarity:285/607 - (46%) Gaps:99/607 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   756 YHRTRLRMMILYTFLILCTLI---FYVLRTFGFFMMTL---------------------RISLRI 796
            |..||: .:..||..::.|::   .|...:...::||:                     ||...|
 Worm   192 YSITRI-FVPYYTGQVIATVVATKSYPALSNAVYIMTIISLVSAVAAGFRGGSFEYAYARIQRAI 255

  Fly   797 HDQLFQGVIRAFMHFFTLATSGRILNRFS------SDVLAIDVNL----PQAMMDSIEFAVNALA 851
            ...||.|:::..:.|:....:|.:.:|.:      ||.:|::||:    ...::.|:.|.:....
 Worm   256 RYDLFHGLVKQDVAFYDAHKTGEVTSRLAADCQTMSDTVALNVNVFLRNCVMLLGSMIFMMKLSW 320

  Fly   852 VLAVVSTANIWLLIPATVVVALLYGCRCLYIGASRSLKRIETISRSPIYSHTNATFKGLATIRAL 916
            .|::|:    ::|:|...|.:.::|.....:    |.:..:||:.|     .:...:.|:|:|.:
 Worm   321 RLSLVT----FILVPIIFVASKIFGTYYDLL----SERTQDTIAES-----NDVAEEVLSTMRTV 372

  Fly   917 N--GTKYMERDFHYYQNENTSALYLHVSINRAFAFWTDLICVLYILAVTFSFLLFDKHRGYYSGD 979
            .  ..:.:|.|..|.:..:|    |.|:..:|.|:    |..|::..:..||::....  :|.|.
 Worm   373 RSFSCENVEADRFYGKLTHT----LDVTRTKAIAY----IGFLWVSELFQSFIIVSVL--WYGGH 427

  Fly   980 VGLAITQSMK-------LVLMCQAG--MRQTVEL-ENMMTSV---ERVMEYVN----IPSEPAYE 1027
              |.:||.||       |:...|.|  :||..|: ..:|.||   .:|.||::    |.....|.
 Worm   428 --LVLTQKMKGDLLVSFLLYQMQLGDNLRQMGEVWTGLMQSVGASRKVFEYIDREPQIQHNGEYM 490

  Fly  1028 TEESVNLPKHWPSGGQLDFRDLRLRYSNHGPY-ILKGLTFTIRGEEKIGIVGHTAAGKSSIVHAL 1091
            .|..|         |:::||::...|...... |||.|:||:...|.:.:||.:.:||||.:..|
 Worm   491 PENVV---------GKIEFRNVHFSYPTRSDQPILKDLSFTVEPGETVALVGPSGSGKSSCISLL 546

  Fly  1092 FRLAHIN-GHISIDGFETSQLGLHDLRRRISIIPQDPVLFSGSLRFNLDPFEEKTDEELWLALEA 1155
            ......| |.:.:||....:...|.:.::|:::.|:||||:.|:..|:....|..|.|:..:.|.
 Worm   547 ENFYVPNAGQVLVDGVPLEEFEHHYIHKKIALVGQEPVLFARSVMENVRYGVEVADTEIIRSCEM 611

  Fly  1156 VKLKEFVSNLKDGINCRLHDCGANFSMGQRQLVCLARALLRQNKILIMDEATANVDPETDNLIQE 1220
            .....|:..........:.:.|...|.||:|.:.:||||:|:..||::||||:.:|.|:::|:||
 Worm   612 ANAHGFIMQTTLKYETNVGEKGTQMSGGQKQRIAIARALVREPAILLLDEATSALDTESEHLVQE 676

  Fly  1221 AIHTKFAHCTVLTIAHRLHTVMDNDRVMVVDMGRVVELGHPHELLHNRHGYLHRFVEKTGVGTAQ 1285
            ||:......:|:.|||||.||...|:::|::.|||.::|:...||.:.:|...:.|::..:|   
 Worm   677 AIYKNLDGKSVILIAHRLSTVEKADKIVVINKGRVEQIGNHETLLKDTNGTYAKLVQRQMMG--- 738

  Fly  1286 HLRHLAEQSYRKRVLGRKSEDQ 1307
                  :|..|||....:|..|
 Worm   739 ------DQKPRKRPAVARSGPQ 754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11898NP_651679.2 CFTR_protein 9..1268 CDD:273530 148/566 (26%)
ABC_membrane 92..358 CDD:294371
ABCC_MRP_domain1 423..626 CDD:213217
ABC_membrane 762..988 CDD:294371 52/261 (20%)
ABCC_MRP_domain2 1042..1261 CDD:213211 73/220 (33%)
haf-4NP_001021666.1 3a01208 16..732 CDD:273363 149/574 (26%)
ABC_membrane 189..449 CDD:279056 58/282 (21%)
ABC_MTABC3_MDL1_MDL2 498..735 CDD:213216 76/236 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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