DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdog and VMR1

DIOPT Version :9

Sequence 1:NP_651678.1 Gene:rdog / 43450 FlyBaseID:FBgn0039644 Length:1374 Species:Drosophila melanogaster
Sequence 2:NP_011828.1 Gene:VMR1 / 856350 SGDID:S000001027 Length:1592 Species:Saccharomyces cerevisiae


Alignment Length:1403 Identity:435/1403 - (31%)
Similarity:690/1403 - (49%) Gaps:212/1403 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 DSERVTNKFAELW----EDE----LK---RSNPSVVRMILRAYG--KIFVPMGLAFSISETICKS 105
            ::::.|.|..::|    ||.    ||   |.|..:..:.|..:.  |.::.:|:.:.:..:|. :
Yeast   289 EAQKNTIKLKDIWGLSMEDYSIFILKGFTRRNKHINNLTLALFESFKTYLLIGMLWVLVNSIV-N 352

  Fly   106 LMPLFLGGLVGYFA-----TNQTDISENTAYLYAMGIVICMLVPVITFHPFIFYIFQVGTKLRLA 165
            |:|..   |:..|.     .|::....|.|:||.:|:.||.|...|......|...::..::|..
Yeast   353 LLPTI---LMKRFLEIVDNPNRSSSCMNLAWLYIIGMFICRLTLAICNSQGQFVSDKICLRIRAI 414

  Fly   166 LSGLIYRKVLQ------VSKSSSNDGLR---GRAINILSNDLGRFDVALCFLHDTWKGPMESILI 221
            |.|.||.|.|:      ...||.:|.:.   |..||::|.|..:......:|:.|.:..:..|::
Yeast   415 LIGEIYAKGLRRRLFTSPKTSSDSDSISANLGTIINLISIDSFKVSELANYLYVTVQAVIMIIVV 479

  Fly   222 GFLMYREIGISAVIGVSFMLSFIPLQAWAAKKAAYYRQMTAERTDMRVKLMNEIIQGIQVIKMYA 286
            ..|::..:|:||..|:|.:|...||....|.....:::.|.:.||.|:..:||.:|.|:::|.:|
Yeast   480 VGLLFNFLGVSAFAGISIILVMFPLNFLLANLLGKFQKQTLKCTDQRISKLNECLQNIRIVKYFA 544

  Fly   287 WEKSFARVIAEVRLKEVKAIRGTAYIHAALGCTSMISP---LSVFLALCSYVYLGDPLTAQKVYT 348
            ||::....|..:|.||::::...:.:.:.......::|   ..|..|:|::|...| |.|...:|
Yeast   545 WERNIINEIKSIRQKELRSLLKKSLVWSVTSFLWFVTPTLVTGVTFAICTFVQHED-LNAPLAFT 608

  Fly   349 VSSYFNMLNDSMVTFWPMSITFIAEALVSAKRCKDFLLDGDKAEVPINLEANQQTGKNKRKISKK 413
            ..|.|.:|...:.....| ::||.::.||.||..|||...|             |.|..:.....
Yeast   609 TLSLFTLLKTPLDQLSNM-LSFINQSKVSLKRISDFLRMDD-------------TEKYNQLTISP 659

  Fly   414 DKQKNVELNGSLLSNGQVHHNRLRDYDPEATKKCVVLKNVSASWDTSDGHANCAIEDFSTDIKDQ 478
            ||.|                              :..||.:.:|:.:|...| |.:....:||.|
Yeast   660 DKNK------------------------------IEFKNATLTWNENDSDMN-AFKLCGLNIKFQ 693

  Fly   479 --TLAAVVGPVGAGKSSFLNVLLGEVGIDKGEAMV------HGKI----------SYASQESWVF 525
              .|..::|..|:|||:.|..||||:.:..|..:|      |..|          :|.||.:|:.
Yeast   694 IGKLNLILGSTGSGKSALLLGLLGELNLISGSIIVPSLEPKHDLIPDCEGLTNSFAYCSQSAWLL 758

  Fly   526 EGTIRDNIVFVEDYNERRYKKVVKVCGLERDMELLPRGDLTVVGERGVSLSGGQKARVSLARAVY 590
            ..|:::||:|...|||.||.||:..|||:||:|:||.||||.:||:|::||||||.|:|||||||
Yeast   759 NDTVKNNIIFDNFYNEDRYNKVIDACGLKRDLEILPAGDLTEIGEKGITLSGGQKQRISLARAVY 823

  Fly   591 RKADIYLLDDPLSAVDTHVGKHIFDRCIR-DFLSNKIRILVTHQVQYLFDVEHL-LLMGSGKIMA 653
            ..|...||||.|||||:|....|::.||. ..:.|:..|||||.|.......|. :::.:||:..
Yeast   824 SSAKHVLLDDCLSAVDSHTAVWIYENCITGPLMKNRTCILVTHNVSLTLRNAHFAIVLENGKVKN 888

  Fly   654 QGSYQELQRSRQFQFLEQTQHDESGIDTHSVSSYLSRSDSEKSMEHQHNQLLRPDEH-------- 710
            ||:..|||....|:                 ..|:..|..:...|...|:|..|.::        
Yeast   889 QGTITELQSKGLFK-----------------EKYVQLSSRDSINEKNANRLKAPRKNDSQKIEPV 936

  Fly   711 VEDVN-------------QEQQTVGSIKMHVYASYIKALDSTFLLGIVISLFVCARIMLTGVDYF 762
            .|::|             :|:::.|:|...||..|:|.......|..:.:|::.|:|:.....::
Yeast   937 TENINFDANFVNDGQLIEEEEKSNGAISPDVYKWYLKFFGGFKALTALFALYITAQILFISQSWW 1001

  Fly   763 LSRWVIWEEQIAVNRTTTLLNETDTTIANDTLPINA-TDPYIAPLLASDIQAGIRQELVLFYATI 826
            :..|        ||.|...:|...  .|.||||:.. ||            :...:....:|.|:
Yeast  1002 IRHW--------VNDTNVRINAPG--FAMDTLPLKGMTD------------SSKNKHNAFYYLTV 1044

  Fly   827 LGATLIVYLIRTFGFFKMC------LRISLHLHDRLFRGITRASMYFFNTNSSGRILNRFSKDIR 885
            .  .||..:....|.||..      :|.|..:.:.|...:..|.:.||:....|||:|||||||.
Yeast  1045 Y--FLIGIIQAMLGGFKTMMTFLSGMRASRKIFNNLLDLVLHAQIRFFDVTPVGRIMNRFSKDIE 1107

  Fly   886 TVDTDLPHTLLDCLAFIIDVSGVVIIVAIANYWLLIPAAIIGVILGMIRYLYVNTSRSVKRLESI 950
            .||.:|...|...:..:|..:.::.::.:.....|..|.|:.|:...:...|:..||.:|||:||
Yeast  1108 GVDQELIPYLEVTIFCLIQCASIIFLITVITPRFLTVAVIVFVLYFFVGKWYLTASRELKRLDSI 1172

  Fly   951 SRSPVFSLTNQTFQGLTTIRALQAQSALEQEFHEYQNTNTSAWFLFLSCT-RAFALWSDVLCIVY 1014
            ::||:|...::|..|:.||||...:.....|.....:.|..|:| :||.| :.|:...|::. .:
Yeast  1173 TKSPIFQHFSETLVGVCTIRAFGDERRFILENMNKIDQNNRAFF-YLSVTVKWFSFRVDMIG-AF 1235

  Fly  1015 MTAVTFSFLLLK-DEFDSGDVGLAILHSTTMTGMCQWGMRQTAELENQMTSVERVLEYTEQPSE- 1077
            :...:.||:||. ...|||..|:::.::...|....|.:|..:..|..|.||||:.||:....| 
Yeast  1236 IVLASGSFILLNIANIDSGLAGISLTYAILFTDGALWLVRLYSTFEMNMNSVERLKEYSSIEQEN 1300

  Fly  1078 ---------ALLETPEKFKPKSEWPSKGRIEFINFKLRYSPKEAPVLKDLNFTIEPREKIGIVGR 1133
                     .||..|       .||..|.||..|..|||:|...||:::::|.::|:.|||||||
Yeast  1301 YLGHDEGRILLLNEP-------SWPKDGEIEIENLSLRYAPNLPPVIRNVSFKVDPQSKIGIVGR 1358

  Fly  1134 TGAGKSSIIQSIFRLACNE---GMIRIDDVDIEHIGLHDLRSQVSIIPQDPVLFSGTLRYNLDPM 1195
            ||||||:||.::|||.  |   |.|:||..||..|.|..||..::||||||:||:||::.|:||.
Yeast  1359 TGAGKSTIITALFRLL--EPITGCIKIDGQDISKIDLVTLRRSITIIPQDPILFAGTIKSNVDPY 1421

  Fly  1196 DERSDEEMWKALGDVELRS-------------YVST--LIGGLNCRMYDGGSNFSVGQRQLVCLA 1245
            ||..:::::|||..|.|.|             :.||  ....|:..:.:||.|.|.|:|||:.:|
Yeast  1422 DEYDEKKIFKALSQVNLISSHEFEEVLNSEERFNSTHNKFLNLHTEIAEGGLNLSQGERQLLFIA 1486

  Fly  1246 RAILRHNKILIMDEATANVDPETDKLIQQTIRSKFAHCTVLTIAHRLHTVMDSDRVLVMDAGEVR 1310
            |::||..||:::||||:::|.::|.|||..|||:|...|:|||||||.:|:|.||::|||||||:
Yeast  1487 RSLLREPKIILLDEATSSIDYDSDHLIQGIIRSEFNKSTILTIAHRLRSVIDYDRIIVMDAGEVK 1551

  Fly  1311 ELGHPYELLQRTGGYLRQLVDNTGAATSFALQQAAEQS 1348
            |...|.|||:...|....:..::|...  .|:|.|:||
Yeast  1552 EYDRPSELLKDERGIFYSMCRDSGGLE--LLKQIAKQS 1587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdogNP_651678.1 CFTR_protein 12..1343 CDD:273530 431/1396 (31%)
ABC_membrane 94..360 CDD:294371 72/282 (26%)
ABCC_MRP_domain1 448..650 CDD:213217 90/221 (41%)
ABC_membrane 821..1046 CDD:294371 66/232 (28%)
ABCC_MRP_domain2 1096..1315 CDD:213211 112/236 (47%)
VMR1NP_011828.1 MRP_assoc_pro 212..1575 CDD:188098 429/1387 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344668
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0054
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100026
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.640

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