DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdog and ABCC1

DIOPT Version :9

Sequence 1:NP_651678.1 Gene:rdog / 43450 FlyBaseID:FBgn0039644 Length:1374 Species:Drosophila melanogaster
Sequence 2:NP_001031116.1 Gene:ABCC1 / 839920 AraportID:AT1G30400 Length:1622 Species:Arabidopsis thaliana


Alignment Length:1381 Identity:435/1381 - (31%)
Similarity:714/1381 - (51%) Gaps:144/1381 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 PFTKANFFSQWSFWWMRDLFKRGLQGPLTDEELYQHRKTLD-SERVTNKFAELWEDELKRSNPSV 77
            |...||.|....|.|:..|...|.:.|||::::: |..|.| :|.:...|.:.|:.||::..|.:
plant   227 PERHANLFDSIFFSWLNPLMTLGSKRPLTEKDVW-HLDTWDKTETLMRSFQKSWDKELEKPKPWL 290

  Fly    78 VRMILRAYGKIFVPMGLAFSISETICKSLMPLFLGGLVGYFATNQTDISENTAYLYAMGIVICML 142
            :|.:..:.|..|. .|..:.|.....:.:.||.|..|:.....|:   .....|:||:.|.:.::
plant   291 LRALNNSLGGRFW-WGGFWKIGNDCSQFVGPLLLNELLKSMQLNE---PAWIGYIYAISIFVGVV 351

  Fly   143 VPVITFHPFIFYIFQVGTKLRLALSGLIYRKVLQVSKSSSNDGLRGRAINILSNDLGRFDVALCF 207
            :.|:....:...:.:||.:||.||...::||.|:::.........|:..|:::.|..........
plant   352 LGVLCEAQYFQNVMRVGYRLRSALIAAVFRKSLRLTNEGRKKFQTGKITNLMTTDAESLQQICQS 416

  Fly   208 LHDTWKGPMESILIGFLMYREIGISAVIGVSFMLSFIPLQAWAAKKAAYYRQMTAERTDMRVKLM 272
            ||..|..|...|:...|:|:::|::::||..|::...|:|.....|.....:...:|||.|:.||
plant   417 LHTMWSAPFRIIVALVLLYQQLGVASIIGALFLVLMFPIQTVIISKTQKLTKEGLQRTDKRIGLM 481

  Fly   273 NEIIQGIQVIKMYAWEKSFARVIAEVRLKEVKAIRGTAYIHAALGCTSMISPLSVFLALCSY-VY 336
            ||::..:..:|.||||.||...:..||..|:...| .|.:.:|.. ..:::.:.|.:.:.|: |:
plant   482 NEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFR-KAQLLSAFN-MFILNSIPVLVTVVSFGVF 544

  Fly   337 --LGDPLTAQKVYTVSSYFNMLNDSMVTFWPMSITFIAEALVSAKRCKDFLLDGDKAEVPINLEA 399
              ||..||..:.:|..|.|::|...:... |..||.:..|.||..|.::.|...::.        
plant   545 SLLGGDLTPARAFTSLSLFSVLRFPLFML-PNIITQMVNANVSLNRLEEVLSTEERV-------- 600

  Fly   400 NQQTGKNKRKISKKDKQKNVELNGSLLSNGQVHHNRLRDYDPEATKKCVVLKNVSASWDTSDGHA 464
                                     ||.|..:          |..:..:.::|...|||:.....
plant   601 -------------------------LLPNPPI----------EPGQPAISIRNGYFSWDSKADRP 630

  Fly   465 NCAIEDFSTDIKDQTLAAVVGPVGAGKSSFLNVLLGEVGIDKGEAMV--HGKISYASQESWVFEG 527
              .:.:.:.||...:|.||||..|.||:|.::.:|||:.. :.:|.|  .|.::|..|.||:|..
plant   631 --TLSNINLDIPLGSLVAVVGSTGEGKTSLISAMLGELPA-RSDATVTLRGSVAYVPQVSWIFNA 692

  Fly   528 TIRDNIVFVEDYNERRYKKVVKVCGLERDMELLPRGDLTVVGERGVSLSGGQKARVSLARAVYRK 592
            |:||||:|...:::.:|::|:.|..|:.|:||||.||||.:|||||::|||||.|||:|||||..
plant   693 TVRDNILFGAPFDQEKYERVIDVTALQHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 757

  Fly   593 ADIYLLDDPLSAVDTHVGKHIFDRCIRDFLSNKIRILVTHQVQYLFDVEHLLLMGSGKIMAQGSY 657
            :|:.:|||||||:|.|||:.:|::||:..|....|:|||:|:.:|..|:.:||:..|.:..:|:|
plant   758 SDVCILDDPLSALDAHVGQQVFEKCIKRELGQTTRVLVTNQLHFLSQVDKILLVHEGTVKEEGTY 822

  Fly   658 QELQRSRQ-FQFLEQT---------QHDESGIDTHSV-------SSYLSRSDSEKSMEHQHNQLL 705
            :||..|.. ||.|.:.         ::.|:.:|..||       ::.|.:...|.....:.|.:|
plant   823 EELCHSGPLFQRLMENAGKVEDYSEENGEAEVDQTSVKPVENGNANNLQKDGIETKNSKEGNSVL 887

  Fly   706 RPDEHVEDVNQEQQTVGSIKMHVYASYIKALDSTFLLGIVISLFVCARIMLTGVDYFLSRWVIWE 770
                    |.:|::..|.:...|...|..||...:::.:::..:|..::.......:||.|    
plant   888 --------VKREERETGVVSWKVLERYQNALGGAWVVMMLVICYVLTQVFRVSSSTWLSEW---- 940

  Fly   771 EQIAVNRTTTLLNETDTTIANDTLPINATDPYIAPLLASDIQAGIRQELVLFYATILGATLIVYL 835
                          ||          :.|.....||..:           :.||.:....:.|.|
plant   941 --------------TD----------SGTPKTHGPLFYN-----------IVYALLSFGQVSVTL 970

  Fly   836 IRTFGFFKMCLRISLHLHDRLFRGITRASMYFFNTNSSGRILNRFSKDIRTVDTDLP---HTLLD 897
            |.::......|..:..:||.:...|.||.|.||.||..|||:|||:||:..:|..:.   :..:.
plant   971 INSYWLIMSSLYAAKKMHDAMLGSILRAPMVFFQTNPLGRIINRFAKDMGDIDRTVAVFVNMFMG 1035

  Fly   898 CLAFIIDVSGVVIIVAIANYWLLIPAAIIGVILGMIRYLYVNTSRSVKRLESISRSPVFSLTNQT 962
            .:|.::....::.||:..:.|.::|  ::.|..|...| |.||||.:||::|.:||||::...:.
plant  1036 SIAQLLSTVILIGIVSTLSLWAIMP--LLVVFYGAYLY-YQNTSREIKRMDSTTRSPVYAQFGEA 1097

  Fly   963 FQGLTTIRALQAQSALEQEFHEYQNTNTSAWFLFLSCTRAFALWSDVL--CIVYMTAVTFSFLLL 1025
            ..||::|||.:|...:.:......:.|.....:.::..|...:..:||  .:|::||   |..::
plant  1098 LNGLSSIRAYKAYDRMAEINGRSMDNNIRFTLVNMAANRWLGIRLEVLGGLMVWLTA---SLAVM 1159

  Fly  1026 KD------EFDSGDVGLAILHSTTMTGMCQWGMRQTAELENQMTSVERVLEYTEQPSEALLETPE 1084
            ::      :..:..:||.:.::.::|......:|..:..||.:.|||||..|.|.||||.| ..|
plant  1160 QNGKAANQQAYASTMGLLLSYALSITSSLTAVLRLASLAENSLNSVERVGNYIEIPSEAPL-VIE 1223

  Fly  1085 KFKPKSEWPSKGRIEFINFKLRYSPKEAPVLKDLNFTIEPREKIGIVGRTGAGKSSIIQSIFRLA 1149
            ..:|...|||.|.|:|.:..|||.|:..|||..::|.|.|.:|:||||||||||||::.::||:.
plant  1224 NNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIV 1288

  Fly  1150 -CNEGMIRIDDVDIEHIGLHDLRSQVSIIPQDPVLFSGTLRYNLDPMDERSDEEMWKALGDVELR 1213
             ..:|.|.||:.||...||.|||..:.||||.|||||||:|:||||..|.:|.::|::|....|:
plant  1289 ELEKGRILIDECDIGRFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWESLERAHLK 1353

  Fly  1214 SYVSTLIGGLNCRMYDGGSNFSVGQRQLVCLARAILRHNKILIMDEATANVDPETDKLIQQTIRS 1278
            ..:.....||:..:.:.|.|||||||||:.||||:||.:|||::|||||.||..||.|||:|||.
plant  1354 DTIRRNPLGLDAEVTEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDVLIQKTIRE 1418

  Fly  1279 KFAHCTVLTIAHRLHTVMDSDRVLVMDAGEVRELGHPYELLQRTGGYLRQLVDNTGAATSFALQQ 1343
            :|..||:|.|||||:|::|.|:|||:|:|:|:|...|..||........::|.:||.|.:..|:.
plant  1419 EFKSCTMLIIAHRLNTIIDCDKVLVLDSGKVQEFSSPENLLSNGESSFSKMVQSTGTANAEYLRS 1483

  Fly  1344 -AAEQSYSKQILGDDT 1358
             ..|...:::..|||:
plant  1484 ITLENKRTREANGDDS 1499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdogNP_651678.1 CFTR_protein 12..1343 CDD:273530 431/1363 (32%)
ABC_membrane 94..360 CDD:294371 69/268 (26%)
ABCC_MRP_domain1 448..650 CDD:213217 88/203 (43%)
ABC_membrane 821..1046 CDD:294371 61/235 (26%)
ABCC_MRP_domain2 1096..1315 CDD:213211 115/219 (53%)
ABCC1NP_001031116.1 PLN03130 1..1622 CDD:215595 435/1381 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 179 1.000 Domainoid score I1056
eggNOG 1 0.900 - - E2759_KOG0054
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D138195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100026
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.720

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