DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdog and abcb9

DIOPT Version :9

Sequence 1:NP_651678.1 Gene:rdog / 43450 FlyBaseID:FBgn0039644 Length:1374 Species:Drosophila melanogaster
Sequence 2:NP_001119906.1 Gene:abcb9 / 570148 ZFINID:ZDB-GENE-050517-12 Length:789 Species:Danio rerio


Alignment Length:843 Identity:194/843 - (23%)
Similarity:350/843 - (41%) Gaps:182/843 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   569 GERGVSLSGGQKARVSLARAVYRKADIYLLDDPLSAVDTHVGKHIFDRCIRDFLSNKIRILVTHQ 633
            |.|.||..|...|.:.|....|..|.:.:|.:.        |..::|..   |||          
Zfish    75 GPRRVSNLGTLVALICLTNMTYALAKLLMLSEE--------GNLMYDPW---FLS---------- 118

  Fly   634 VQYLFD---VEHLLLMGSGKIMAQGSYQELQRSRQFQFLEQTQHDESGIDTHSVSSYLSRSDSEK 695
               ||.   |..:.:|...||::|.......|       |.::..|..:|.       :..:|||
Zfish   119 ---LFSWTCVAAIGVMIFWKILSQTPNAVSDR-------EDSEDTERLVDE-------TEDESEK 166

  Fly   696 SM----EHQHNQLLRPDEHVEDVNQEQQTVGSIKMHVYASYIKALDSTFLLGIVISLFVCARIML 756
            ||    ||.|:               ..|:|.:     .||.|. ||: ||.|.....:.:.:..
Zfish   167 SMKSGKEHTHS---------------GATIGRL-----LSYCKK-DSS-LLSIAFFFLLLSAVCE 209

  Fly   757 TGVDYFLSRWVIWEEQIAVNRTTTLLNETDTTIANDTLPINATDPYIAPLLASDIQAGIRQELVL 821
            ..:.|:..:.:   :.|.:.:                    :.|.:..|::...:.|.:....:.
Zfish   210 AFIPYYTGQAI---DGIVIQK--------------------SMDHFAKPMITLSVLALVSSIAIG 251

  Fly   822 FYATILGATLIVYLIRTFGFFKMCLRISLHLHDRLFRGITRASMYFFNTNSSGRILNRFSKDIRT 886
            |...:...|.              .|:::.|.:.|||.:....:.||:.|.:|.|.:|.:.|...
Zfish   252 FRGGVFSVTF--------------ARLNIRLRNLLFRSLMHQEIGFFDANHTGDITSRLTSDTTQ 302

  Fly   887 VDTDLPHTLLDCLAFIIDVSGVVIIVAIANYWLLIPAAIIGV-ILGMIRYLYVNTSRSVKRLESI 950
            |...:...:...|...:...|:.|.: ....|.|....|:|. .:.::..||....:.:.:....
Zfish   303 VSDLISQNVNLFLRSFVKAVGIFIFM-FGMSWKLSVVTIMGFPYIAVVSKLYGEYYKKLTKEVQT 366

  Fly   951 SRSPVFSLTNQTFQGLTTIRALQAQSALEQEFHEYQNTNTSAWFLFLSCTRAFA--LWSDVLC-I 1012
            :.:....:..:|...:.|:|:...:   :||...|.:.....:.|......|:|  :||..:. :
Zfish   367 ALAQANKVAEETISAMRTVRSFANE---DQEGDMYYSRLQEMFVLNKKQAIAYACFMWSSYISEL 428

  Fly  1013 VYMTAVTF--SFLLLKDEFDSGDVGLAILH-----------STTMTGMCQWGMRQTAELENQMTS 1064
            ....|:.|  ..|::.::...|.:...:::           |:..||:.|           .:.:
Zfish   429 ALQVAILFYGGHLVVTNQMSGGTLISFVIYELELGEALESISSVYTGLMQ-----------GVGA 482

  Fly  1065 VERVLEYTE-QPSEAL--LETPEKFKPKSEWPSKGRIEFINFKLRY-SPKEAPVLKDLNFTIEPR 1125
            .|:|.||.: :|..||  .|.||..        :|::||.|....| |..|..|||:::|::.|.
Zfish   483 AEKVFEYIDRKPKHALNGQEAPETL--------EGQVEFNNVTFAYPSRPEMDVLKNVSFSLRPG 539

  Fly  1126 EKIGIVGRTGAGKSS---IIQSIFRLACNEGMIRIDDVDI---EHIGLHDLRSQVSIIPQDPVLF 1184
            :...:||.:|.||||   ::::.:  |..:|.:.:|...:   :|...|   |:|:::.|:||||
Zfish   540 QVTALVGPSGGGKSSCVCLLENFY--APQQGQVLVDGRPVNTYQHKYYH---SKVALVAQEPVLF 599

  Fly  1185 SGTLRYNLD-PMDERSDEEMWKALGDVELRSYVSTLIGGLNCRMYDGGSNFSVGQRQLVCLARAI 1248
            :.|::.|:. .:.|...|.:.:|..:.....:::.|..|.:..:.:.|:..|.||:|.|.:|||:
Zfish   600 ARTVQMNISYGVPEAPMEAVIRAAINANAHDFITGLSKGYDSGVGEKGTQLSGGQKQRVAIARAL 664

  Fly  1249 LRHNKILIMDEATANVDPETDKLIQQTIRSKFAHCTVLTIAHRLHTVMDSDRVLVMDAGEVRELG 1313
            :|..:|||:||||:.:|.|::.::||.:.:.....|||.|||||.||..:|.:||:|.|.|.|.|
Zfish   665 IRSPRILILDEATSALDSESEYIVQQALNNLMREHTVLVIAHRLSTVERADNILVIDKGSVVEQG 729

  Fly  1314 HPYELLQRTGGYLRQLVDNTGAATSFALQQAAEQSYSKQILGDDTAAEDLNITLA--MEEKTQ 1374
            ...||:.|.|.|.:.:                    .:||||.:...:|.|.:.|  .|.||:
Zfish   730 PHAELMARGGLYCKLV--------------------QRQILGTEIDVDDKNPSPAPTWELKTE 772

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdogNP_651678.1 CFTR_protein 12..1343 CDD:273530 184/808 (23%)
ABC_membrane 94..360 CDD:294371
ABCC_MRP_domain1 448..650 CDD:213217 19/83 (23%)
ABC_membrane 821..1046 CDD:294371 40/241 (17%)
ABCC_MRP_domain2 1096..1315 CDD:213211 77/226 (34%)
abcb9NP_001119906.1 3a01208 46..745 CDD:273363 184/794 (23%)
ABC_membrane 199..458 CDD:279056 44/299 (15%)
P-loop_NTPase 500..725 CDD:304359 77/237 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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