DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdog and abcc6a

DIOPT Version :9

Sequence 1:NP_651678.1 Gene:rdog / 43450 FlyBaseID:FBgn0039644 Length:1374 Species:Drosophila melanogaster
Sequence 2:XP_009300481.1 Gene:abcc6a / 566555 ZFINID:ZDB-GENE-050517-18 Length:1507 Species:Danio rerio


Alignment Length:1387 Identity:470/1387 - (33%)
Similarity:718/1387 - (51%) Gaps:163/1387 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 KN--PFTKANFFSQWSFWWMRDLFKRGLQGPLTDEELYQHRKTLDSERVTNKFAELW-------- 66
            ||  |...|:|.|:..|||...|..:|.:.||..|:|:..|:...|||:.:...|.|        
Zfish   201 KNACPVQDASFLSKILFWWFSGLIFKGYRSPLQAEDLWSLREEDTSERIISDLEEEWTAKRTKLQ 265

  Fly    67 --EDELKRSNPSVVRM-----ILRAYGKIFVPMGLAFSISETICKSLMPLFLGG----------- 113
              |:.:..|.....|:     :||   ||.......|.:..|:.:|..|.||.|           
Zfish   266 QQENHMSTSAALGSRLPDQAQLLR---KIQKEQSSGFCLLRTLARSFGPYFLTGTLCLIVHDVFM 327

  Fly   114 ---------LVGYFATNQTDISENTAYLYAMGIVICMLVPVITFHPFIFYIFQVGTKLRLALSGL 169
                     |:|:.....|.:.:  .|.||..:.:...:..:..|.:.:..|.||.:::.|:.||
Zfish   328 FSVPQVLSLLLGFMKDEDTPLWK--GYFYATLMFLLSCLQSVFNHQYTYTCFTVGMRVKTAVMGL 390

  Fly   170 IYRKVLQVSKSSSNDGLRGRAINILSNDLGRFDVALCFLHDTWKGPMESILIGFLMYREIGISAV 234
            :|||.|.::.|:......|..:|::|.|..:....:.:.:..|..|:|..|..|.:::.:|.||:
Zfish   391 VYRKSLVMNSSARRTCTVGEIVNLVSADTQKLMDFVVYFNAVWLAPIEVTLCLFFLWQHLGPSAL 455

  Fly   235 IGVSFMLSFIPLQAWAAKKAAYYRQMTAERTDMRVKLMNEIIQGIQVIKMYAWEKSFARVIAEVR 299
            .|::.::...||..:.|:|.:..:::..:..|.||||||||:.||:::|.|||||:|...:...|
Zfish   456 AGIATVIFIFPLNGFIARKRSKLQEIQMKYMDGRVKLMNEILNGIKILKFYAWEKAFLEQVLGYR 520

  Fly   300 LKEVKAIRGTAYIHA-ALGCTSMISPLSVFLALCSYVYLGDP--LTAQKVYTVSSYFNMLNDSMV 361
            .||:|.::.:..::: :|...:..|.|..|.....||.:.|.  |.|||::...:..|:|...:.
Zfish   521 EKELKTLKKSQILYSVSLASFNSSSFLIAFAMFGVYVLIDDKNVLDAQKIFVSMALINILKTPLS 585

  Fly   362 TFWPMSITFIAEALVSAKRCKDFLLDGDKAEVPINLEANQQTGKNKRKISKKDKQKNVELNGSLL 426
            .. |.:::...:||||.||...||...:..  |.|:         .|:..|.|      ::|.:.
Zfish   586 QL-PFAMSTTMQALVSLKRLGKFLCQDELK--PDNV---------ARESFKSD------VDGVVF 632

  Fly   427 SNGQVHHNRLRDYDPEATKKCVVLKNVSASWDTSDGHANCAIEDFSTDIKDQTLAAVVGPVGAGK 491
            .||                        :.|| :.||..  .::..|..:...:|.||||.||:||
Zfish   633 DNG------------------------TFSW-SKDGPP--CLKRISVKVPCGSLVAVVGHVGSGK 670

  Fly   492 SSFLNVLLGEVGIDKGEAMVHGKISYASQESWVFEGTIRDNIVFVEDYNERRYKKVVKVCGLERD 556
            ||.|:.:|||.....|...|.|.|:|..|::|:...:::|||:|..:..|..|::|::.|.|..|
Zfish   671 SSLLSAMLGETEKRSGTVSVKGSIAYVPQQAWIQNASLQDNILFGREKKESWYQRVLEACALLPD 735

  Fly   557 MELLPRGDLTVVGERGVSLSGGQKARVSLARAVYRKADIYLLDDPLSAVDTHVGKHIFDRCI--R 619
            ::.||.||.|.:||:|::||||||.|||||||||||.|:|||||||||||.|||:|||::.|  :
Zfish   736 LDNLPAGDATEIGEKGLNLSGGQKQRVSLARAVYRKGDVYLLDDPLSAVDAHVGQHIFNKVIGPK 800

  Fly   620 DFLSNKIRILVTHQVQYLFDVEHLLLMGSGKIMAQGSYQEL---------------QRSRQFQFL 669
            ..|.:|.|:||||.:.:|...:.:|::..|:|..:||||||               ...|:..|.
Zfish   801 GILRDKTRVLVTHGMSFLPQADLILVLVDGEISERGSYQELLNRNGAFADFIHTFANSERKECFS 865

  Fly   670 EQTQHDESGIDTHSVSSYL--SRSDSEKSM--EHQHNQLLRP-----DEHV-EDVNQ----EQQT 720
            |..|.........||:.|:  ||..|::.:  ...::..:.|     ::|: ||:.:    ::..
Zfish   866 EALQRGSRKSVRLSVTDYMPFSRDLSQEQLIGGDTNSIAIEPLPDSDEDHIPEDLGKLTKVDKAR 930

  Fly   721 VGSIKMHVYASYIKALDSTFLLGIVISLFVCARIMLTGVDYFLSRWVIWEEQIAVNRTTTLLNET 785
            :|.:|:.:|..|.:.:....::.||. |:...:......:|:||   :|.:|..:|.|.      
Zfish   931 IGRVKLEMYIEYFRTIGLPLIISIVF-LYAFQQAASLSNNYWLS---LWADQPVINGTQ------ 985

  Fly   786 DTTIANDTLPINATDPYIAPLLASDIQAGIRQELVLFYA-TILGATLIVYLIRTFGFFKMCLRIS 849
                                 |.:|::.|:...|..... :|.|.|:.:.|        .|:..|
Zfish   986 ---------------------LNTDLKLGVYGALGFAQGISIFGTTVAISL--------GCIIAS 1021

  Fly   850 LHLHDRLFRGITRASMYFFNTNSSGRILNRFSKDIRTVDTDLPHTLLDCLAFIIDVSGVVIIVAI 914
            .|||..|...:..:.|.||.:..||.:||||:|:|..:|..:|..|...|::...::.|.|||.:
Zfish  1022 RHLHLDLLNNVLHSPMSFFESTPSGNLLNRFAKEIDAIDNMIPDGLKMMLSYFFKLTEVCIIVLM 1086

  Fly   915 ANYWLLIPAAIIGVILGMIRYLYVNTSRSVKRLESISRSPVFSLTNQTFQGLTTIRALQAQSALE 979
            |..:..:....:..:.|.|:..||.||..::||||:||||:::..|:|.||.:.|||...||...
Zfish  1087 ATPFAAVIILPMVFLYGFIQSFYVATSCQLRRLESVSRSPIYTHLNETVQGASVIRAFNEQSRFI 1151

  Fly   980 QEFHEYQNTNTSAWFLFLSCTRAFALWSDVLCIVYMTAVTFSFLLLKDEFDSGDVGLAILHSTTM 1044
            ...:...:.|.:|:|.....||...:..:.|....:.|.:...::.|.....|.||||:.||..:
Zfish  1152 MGANHKVDHNQTAYFPRFIATRWLGVNLEFLGNGIVLAASILSVMAKGTLSPGMVGLAVSHSLQV 1216

  Fly  1045 TGMCQWGMRQTAELENQMTSVERVLEYTEQPSEALLETPEKFKPKSEWPSKGRIEFINFKLRYSP 1109
            ||...|.:|...::||.:.|||||.||.:.|.||.........|.| ||..|.|||.::.|:|..
Zfish  1217 TGFLSWIVRSWTDVENNIVSVERVKEYADTPKEAAWSIEGSSLPPS-WPQTGTIEFQDYGLQYRK 1280

  Fly  1110 KEAPVLKDLNFTIEPREKIGIVGRTGAGKSSIIQSIFR-LACNEGMIRIDDVDIEHIGLHDLRSQ 1173
            .....||.::..|..||||||||||||||||:...||| |...:|.|.||.::|..||||||||:
Zfish  1281 GLELALKGISVHIHEREKIGIVGRTGAGKSSLALGIFRILEAAKGEIYIDGINIAEIGLHDLRSR 1345

  Fly  1174 VSIIPQDPVLFSGTLRYNLDPMDERSDEEMWKALGDVELRSYVSTLIGGLNCRMYDGGSNFSVGQ 1238
            ::|||||||||||:||.||||.:..||||:|.||....|:::||.|...||....:||.|.|:||
Zfish  1346 ITIIPQDPVLFSGSLRMNLDPFNAYSDEEVWNALELAHLKNFVSELPDKLNHECSEGGENLSLGQ 1410

  Fly  1239 RQLVCLARAILRHNKILIMDEATANVDPETDKLIQQTIRSKFAHCTVLTIAHRLHTVMDSDRVLV 1303
            |||||||||:||..|:|::|||||.:|.|||.|||.||||:|..|.||||||||:|:||..:|:|
Zfish  1411 RQLVCLARALLRKTKVLVLDEATAALDLETDTLIQSTIRSQFEDCAVLTIAHRLNTIMDYTKVIV 1475

  Fly  1304 MDAGEVRELGHPYELLQRTGGY 1325
            ||.|.|.|:..|..|:.:.|.:
Zfish  1476 MDKGHVVEMDSPSNLIAKRGQF 1497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdogNP_651678.1 CFTR_protein 12..1343 CDD:273530 470/1387 (34%)
ABC_membrane 94..360 CDD:294371 77/288 (27%)
ABCC_MRP_domain1 448..650 CDD:213217 90/203 (44%)
ABC_membrane 821..1046 CDD:294371 68/225 (30%)
ABCC_MRP_domain2 1096..1315 CDD:213211 127/219 (58%)
abcc6aXP_009300481.1 MRP_assoc_pro 5..1506 CDD:188098 470/1387 (34%)
ABC_membrane 317..584 CDD:279056 70/268 (26%)
ABCC_MRP_domain1 630..831 CDD:213217 92/227 (41%)
ABC_membrane 955..1218 CDD:279056 81/301 (27%)
ABCC_MRP_domain2 1267..1487 CDD:213211 127/219 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586079
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0054
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG51855
OrthoDB 1 1.010 - - D138195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100026
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.660

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