DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdog and Abcc10

DIOPT Version :9

Sequence 1:NP_651678.1 Gene:rdog / 43450 FlyBaseID:FBgn0039644 Length:1374 Species:Drosophila melanogaster
Sequence 2:NP_001101671.1 Gene:Abcc10 / 316231 RGDID:1306696 Length:1494 Species:Rattus norvegicus


Alignment Length:1418 Identity:432/1418 - (30%)
Similarity:691/1418 - (48%) Gaps:208/1418 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PKNPFTKANF-----------------FSQWSFWWMRDLFKRGLQGPLTDEELYQHRKTLDSERV 58
            |:.|:|...|                 .|::|:.|:..|..||::|.|        |:..|:.|:
  Rat   195 PREPWTHDPFLSPESQEREVAEDGESWLSRFSYAWLAPLLARGVRGEL--------RQPQDTCRL 251

  Fly    59 TNKF----------------AELWEDELKRSNPSVVRMILRAYGKIFVPMGLAFSISETICKSLM 107
            ..:.                |:||            |.:..|:|..::.:||...:. |:.....
  Rat   252 PRRLHPAYLARAFQAHWKEGAQLW------------RALYGAFGCCYIALGLLKMVG-TMLGFSG 303

  Fly   108 PLFLGGLVGYFATNQTDISENTAYLYAMGIVICMLVPVITFHPFIFYIFQVGTKLRLALSGLIYR 172
            ||.|..|||:....|..:|.  ..||.:|:....::..:..:.:.:.:.:|..:.|:|:..::||
  Rat   304 PLLLSLLVGFLEEGQEPLSH--GLLYVLGLASGSVISAVLQNQYGYEVRKVTLQARVAVLSILYR 366

  Fly   173 KVLQVSKSSSNDGLRGRAINILSNDLGRFDVALCFLHDTWKGPMESILIGFLMYREIGISAVIGV 237
            |.|::..|...   .|..:|:|..|..|........|:.|..|::..:..:|:|.::|::.:.|:
  Rat   367 KTLKLGPSRPP---TGEVLNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYEQVGVAFLAGL 428

  Fly   238 SFMLSFIPLQAWAAKKAAYYRQMTAERTDMRVKLMNEIIQGIQVIKMYAWEKSFARVIAEVRLKE 302
            ...|..:|:....|.:.....|......|.|||||.|::.||:|:|.:.||::....:...|.:|
  Rat   429 VLALLLVPVNKVIATRIMANNQEMLRHKDARVKLMTELLSGIRVLKFFRWEQALGDRVKACRTQE 493

  Fly   303 VKAIRGTAYIHAALGCTSMISPLSVFLAL---CSYVYLGDPLTAQKVYTVSSYFNMLNDSMVTFW 364
            :..:|...|:.||  |..:.:.|.|.:.:   .:||.||..|||.||:|..:..:||...:..| 
  Rat   494 LGRLRVIKYLDAA--CVYLWAALPVVICIVIFITYVLLGHQLTATKVFTALALVHMLILPLNNF- 555

  Fly   365 PMSITFIAEALVSAKRCKDFLLDGDKAEVPINLEANQQTGKNKRKISKKDKQKNVELNGSLLSNG 429
            |..|..:.|:.||..|.:.||      ::|                                   
  Rat   556 PWVINGLLESKVSLDRIQRFL------DLP----------------------------------- 579

  Fly   430 QVHHNRLRDYDPEA-------TKKCVVLKNVSA--SWDTSDGHANCAIEDFSTDIKDQTLAAVVG 485
                    .|.|||       |:...||:...|  |||.:.......|...  .:|...|..:||
  Rat   580 --------SYSPEAYYSPDPPTEPSTVLELHEALFSWDPTGTSQKTFISHL--QVKKGMLVGIVG 634

  Fly   486 PVGAGKSSFLNVLLGEV----------GIDKGEAMVHGKISYASQESWVFEGTIRDNIVFVEDYN 540
            .||.||||.|..:.||:          .:.||       ...|:||.|:...|||||::|.:.::
  Rat   635 KVGCGKSSLLAAITGELHRLCGWVAVSDLSKG-------FGLATQEPWIQCATIRDNVLFGKTFD 692

  Fly   541 ERRYKKVVKVCGLERDMELLPRGDLTVVGERGVSLSGGQKARVSLARAVYRKADIYLLDDPLSAV 605
            .:.|::|::.|.|..|:.:||.||.|.|||:||:|||||:||::||||||::..:|||||||:||
  Rat   693 AQLYREVLEACALNDDLSILPAGDQTEVGEKGVTLSGGQRARIALARAVYQEKTLYLLDDPLAAV 757

  Fly   606 DTHVGKHIFDRCIRDFLSNKIRILVTHQVQYLFDVEHLLLMGSGKIMAQGSYQE---LQRSRQFQ 667
            |..|..|:..|||...|.:..|:|.||:.:||...:.:|||.:|:::..|...|   |.::....
  Rat   758 DADVANHLLHRCILGVLGHTTRLLCTHRTEYLERADLVLLMEAGRLVRAGPPSEILPLVQAAPTA 822

  Fly   668 FLEQTQHDESGIDTHSVSSYLSRSDSEKSMEHQHNQLLRPDEHVEDVNQEQQTVGSIKMHVYASY 732
            ..::.|..:|| .:.||.: |.::..|..:....:..|        |.:|.::.|::.:|||.:|
  Rat   823 LADKEQVTDSG-QSPSVHN-LEKTTEELDVAQNTSGRL--------VQEESKSEGAVALHVYRAY 877

  Fly   733 IKALDSTFLLGIVISLFVCARIMLTGVDYFLSRWVIWEEQIAVNRTTTLLNETDTTIANDT---- 793
            .:|:.|.....|:|||.: .:....|.|::|:.|:   .|:...|     |.::...|:.:    
  Rat   878 WRAMGSGLATAILISLLL-MQATRNGADWWLAHWL---SQLKAGR-----NSSEERPASSSPRSM 933

  Fly   794 -------LPINATDPYIAPLL------ASDIQAGIRQELVLFYATILGATLIVYLIRTFGFFKMC 845
                   |..:..:.|| ||.      :||:..     .:..||||.|...:..|:|...|....
  Rat   934 GFFSPRLLLFSPGNLYI-PLHKATSNGSSDVHF-----YLTVYATIAGVNSLCTLLRAVLFAAGA 992

  Fly   846 LRISLHLHDRLFRGITRASMYFFNTNSSGRILNRFSKDIRTVDTDLPHTLLDCLAFIIDVSGVVI 910
            |:.:..||.||...:..|.:.|:::..|||:|||||.|:..||..||..|...||..:.:.|::.
  Rat   993 LQAAASLHHRLLHRLLMAPVTFYDSTPSGRVLNRFSSDVACVDDSLPFLLNILLANSVGLLGLLA 1057

  Fly   911 IVAIANYWLLIPAAIIGVILGMIRYLYVNTSRSVKRLESISRSPVFSLTNQTFQGLTTIRALQAQ 975
            ::.....|||:....:..|...::..|..:.|.::||.|::.||::|....|..||..:||..|.
  Rat  1058 VLGSGLPWLLLLLPPLSFIYYGVQRRYRASFRELRRLGSLTLSPLYSHLADTLAGLPVLRAAGAT 1122

  Fly   976 SALEQEFHEYQNTNTSAWFLFLSCTRAFALWSDVLCIVYMTAVTFS---FLLLKDE---FDSGDV 1034
            ...|:|.......|....|    .:.|...|.|:...:...||..:   ..|::.:   .:.|.|
  Rat  1123 YRFEEENQRLLELNQRCQF----ASYATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGLANPGLV 1183

  Fly  1035 GLAILHSTTMTGMCQWGMRQTAELENQMTSVERVLEYT-EQPSEALLETPEKFKPKSEWPSKGRI 1098
            ||.:.::.::||:....:....:.|..|.||||:.||: :.|.|...:.|:....:..|.::|.:
  Rat  1184 GLVLSYALSLTGLLSGLVSSFTQTEAMMVSVERLEEYSCDIPQEPHGQPPQSPHQRVSWLTQGSV 1248

  Fly  1099 EFINFKLRYSPKEAPVLKDLNFTIEPREKIGIVGRTGAGKSSIIQSIFR-LACNEGMIRIDDVDI 1162
            ||.:..|.|.|.....|..:.|.:||.||:|||||||:||||:...:|| |..:.|.:.:|.||.
  Rat  1249 EFQDVVLVYRPGLPNALDGVTFRVEPGEKLGIVGRTGSGKSSLFLVLFRLLEPSAGQVLLDGVDT 1313

  Fly  1163 EHIGLHDLRSQVSIIPQDPVLFSGTLRYNLDPMDERSDEEMWKALGDVELRSYVSTLIGGLNCRM 1227
            ..:.|.:||||:::|||:|.|||||:|.||||.....|..:|:||....| |.|:..||||:..:
  Rat  1314 SQLELAELRSQLAVIPQEPFLFSGTVRENLDPQGLHEDRALWQALEQCHL-SEVAMAIGGLDGEL 1377

  Fly  1228 YDGGSNFSVGQRQLVCLARAILRHNKILIMDEATANVDPETDKLIQQTIRSKFAHCTVLTIAHRL 1292
            .:.|.:.|:|||||:|||||:|...|||.:|||||:||.:||:|:||||..:||:.|||||||||
  Rat  1378 GERGRDLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICRRFANKTVLTIAHRL 1442

  Fly  1293 HTVMDSDRVLVMDAGEVRELGHPYELLQRTGGYLRQLVDNTGAATSFALQQAA 1345
            :|:::||||||:.||.|.||..|..|..:.....|||:.::        ||.|
  Rat  1443 NTILNSDRVLVLQAGRVVELDSPSALRNQPHSLFRQLLQSS--------QQGA 1487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdogNP_651678.1 CFTR_protein 12..1343 CDD:273530 428/1413 (30%)
ABC_membrane 94..360 CDD:294371 71/268 (26%)
ABCC_MRP_domain1 448..650 CDD:213217 85/213 (40%)
ABC_membrane 821..1046 CDD:294371 64/230 (28%)
ABCC_MRP_domain2 1096..1315 CDD:213211 113/219 (52%)
Abcc10NP_001101671.1 CFTR_protein 211..1485 CDD:273530 425/1398 (30%)
ABC_membrane 290..552 CDD:294371 72/269 (27%)
ABCC_MRP_domain1 599..802 CDD:213217 84/211 (40%)
ABC_membrane 957..1190 CDD:294371 66/241 (27%)
PBP2_NikA_DppA_OppA_like <1201..>1274 CDD:294989 20/72 (28%)
ABCC_MRP_domain2 1246..1465 CDD:213211 113/219 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345120
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0054
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D138195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100026
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.650

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