DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdog and ybt1

DIOPT Version :9

Sequence 1:NP_651678.1 Gene:rdog / 43450 FlyBaseID:FBgn0039644 Length:1374 Species:Drosophila melanogaster
Sequence 2:NP_594585.1 Gene:ybt1 / 2542640 PomBaseID:SPAC9E9.12c Length:1427 Species:Schizosaccharomyces pombe


Alignment Length:1374 Identity:371/1374 - (27%)
Similarity:644/1374 - (46%) Gaps:213/1374 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KVVRPKNPFTKANFFSQWSFWWMRDLFKRGLQGPLTDEELYQHRKTLDSERVTNKFAELWEDEL- 70
            ||.||....|.:.|...:::.|:..:..:..:.|:|..::    ..|.....|    ::|.... 
pombe   187 KVARPSPEQTCSIFSLIFTYGWLNGIIWKSWKKPITLTDV----PALPDTECT----QIWYSRFA 243

  Fly    71 KRSNPSVVRMILRAY-GKIFVPMGLAFSISETICKSLMPLFLGGLVGYFATNQTDISENTAYLYA 134
            |....|::..||.:. ..|.:.:.|:..:|.|:  .:.||.:..|:.|....::| ..|:.:|:.
pombe   244 KNDRKSLMHTILLSLKSTILLMVFLSVLVSSTL--FVTPLAIKKLLQYLQNPKSD-EGNSPFLWV 305

  Fly   135 MGIVICMLVPVITFHPFIFYIFQVGTKLRLALSGLIYRKVLQVSKS--SSNDGLR---GRAINIL 194
            ..::|...:..:....::....:...:::.|::.:||:||| .||:  .:.||.:   ....|:|
pombe   306 FVLLIGPYLASVVKELYVHVSRRFMLRIKAAITQMIYKKVL-TSKTLFVAVDGSKINLDYVYNLL 369

  Fly   195 SNDLGRFDVALCFLHDTWKGPMESILIGFLMYREIGISAVIG--VSFMLSFIPLQAWAAKKAAYY 257
            :.|:........|:....:.|:|..:..:.:|:.:|.||.:|  ::.:.|..||  ..|.|.:..
pombe   370 AKDVDNIGEMREFIGIIARAPLEMGVSMYFLYQLLGWSAYVGLLLAILSSSFPL--LVASKISRL 432

  Fly   258 RQMTAERTDMRVKLMNEIIQGIQVIKMYAWEKSFARVIAEVRLKEVKAIRGTAYIHAALGCTSMI 322
            ..:....:|.|::|..|:::.|::.|::.||:.....|.|.|..||..:...............|
pombe   433 TSIANTSSDERIRLTTELLKSIKITKLFGWERPMLSRIQEKRSFEVNNMYSLTLFDIIFKSGMKI 497

  Fly   323 SP-LSVFLALCSYV-YLGDPLTAQKVYTVSSYFNMLNDSMVTFWPMSITFIAEALVSAKRCKDFL 385
            :| :|:|:....|. .:|..||....:|..|.|.:|....:....:|..|| :..||.||..:| 
pombe   498 APFISMFITFAIYTKIMGHQLTPATAFTSISMFGLLRYQFIWLASVSRQFI-QFKVSLKRVDNF- 560

  Fly   386 LDGDKAEVPINLEANQQTGKNKRKISKKDKQKNVELNGSLLSNGQVHHNRLRDYDPEATKKCVVL 450
                                                         |:.|.:.|...|::.. .|.
pombe   561 ---------------------------------------------VYGNMVNDSSIESSDS-FVF 579

  Fly   451 KNVSASWDTSDGHANCAIEDFSTDIKDQTLAAVVGPVGAGKSSFLNVLLGEVGIDKGE---AMVH 512
            :|.|.||..:...|...:::.:..|.......|||..|:|||:....||||:.:..|:   ..:.
pombe   580 ENTSLSWSPTPSTALFQLKNLNFTIPRNQFTLVVGSTGSGKSTLAMALLGELHVISGKMTTPSIS 644

  Fly   513 GKISYASQESWVFEGTIRDNIVFVEDYNERRYKKVVKVCGLERDMELLPRGDLTVVGERGVSLSG 577
            .:|:|..|.:|:..||||.||:|.|.|:|.||.:::|.|.|:.|:..:..||||.:...|.||||
pombe   645 QRIAYVPQAAWLRNGTIRSNILFGEPYDEERYFQIIKACCLDSDLNSMNDGDLTYIHSNGSSLSG 709

  Fly   578 GQKARVSLARAVYRKADIYLLDDPLSAVDTHVGKHIFDRC-IRDFLSNKIRILVTHQVQYLFDV- 640
            |||.|||||||:|..|::|:.||..||:|....:.|::.| :...|.:|..||.||.|.....: 
pombe   710 GQKQRVSLARALYSNAEVYIFDDIFSALDVSTSRKIYESCFLSTLLQHKTIILFTHNVSLCLPIA 774

  Fly   641 EHLLLM--GSGKIMAQGSYQELQRSRQFQFLEQTQHD---ESGIDTHSV---SSYLSRSDSEKSM 697
            |:::::  .:.::::..|.|||..|..|.  ..|:.|   |..::.||.   |:..|.||:::..
pombe   775 ENVIVLKNSTAQLVSPDSIQELVPSTFFS--SNTKKDNIEEENLEPHSFSFDSTLASSSDNDEQR 837

  Fly   698 EHQHNQLLRPDEHVEDVNQEQQTVGSIKMHVYASYIKALDST-FLLGIVISLFVCARIMLTGVDY 761
            :...|                .::..:.:|    |:|...|. ::||.:: |.:.:::.|..:.:
pombe   838 DFASN----------------SSIVLLGLH----YLKYFGSNKYILGSIL-LVMMSQVSLASIHF 881

  Fly   762 FLSRWVIWEEQIAVNRTTTLLNETDTTIANDTLPINATDPYIAPLLASDIQAGIRQELVLFYATI 826
            :::.|                  :..::.:..||.:.:                   .:..||.:
pombe   882 WIALW------------------SGNSLFSLKLPSSFS-------------------FLWGYAIL 909

  Fly   827 LGATLIVYLIRTFGFFKMCLRISLHLHDRLFRGITRASMYFFNTNSSGRILNRFSKDIRTVD--- 888
            |....::.|.|...|.|.....|.::||.|...:..:.:::|...::||||||||||:...|   
pombe   910 LFIYFLMDLSRAITFAKGGRTASENIHDILSERVLYSPLHWFEKTAAGRILNRFSKDMYATDNLL 974

  Fly   889 -TDLPHTLLDCLAFIIDVSGVVIIVAIANYWLLIPAAIIGVILGMIRYLYVNTSRSVKRLESISR 952
             ..|...||..:|.:|.:..|.:::.|    .::|||.:.:::.:..|.|....:.:..|:|...
pombe   975 WASLEGMLLCVMAILITMLNVTLVMPI----FMVPAAFVSLLVYLHGYAYSKAQKQLTSLQSSRT 1035

  Fly   953 SPVFSLTNQTFQGLTTIRALQAQSALEQEFHEYQNTNTSAWFLFLSCTRAFALWSDVLCIVYMTA 1017
            ||||::..:|..|:|.|||.:     :::..|::|               .|...|::..:|::.
pombe  1036 SPVFTMLGETLGGITVIRAFK-----KEKIFEHEN---------------MAFIDDMIQPLYISF 1080

  Fly  1018 VTFSFLLLKDEFDSGDVG-----LAILHSTTMTGMCQWGM--------------RQTAELENQMT 1063
            ....:|.::.:..||.||     :|:|......|:..:.:              |...|:...:.
pombe  1081 AINRWLAIRTDGISGLVGFSTGLIALLRQNIPPGLVGFSLNSAIGFNISVLVFVRANNEILTYIN 1145

  Fly  1064 SVERVLEYTEQPSEALLETPEKFKP-KSEWPSKGRIEFINFKLRYSPKEAPVLKDLNFTIEPREK 1127
            :..|:.||...|||. .|:....|| ..|||:.|.:...|..:.||..:|.||:|:|..|.|:||
pombe  1146 NFRRLYEYMLLPSEK-NESSCLTKPMNKEWPTLGHVSIKNLTVSYSIGQAAVLEDINLEILPKEK 1209

  Fly  1128 IGIVGRTGAGKSSIIQSIFRLA-CNEGMIRIDDVDIEHIGLHDLRSQVSIIPQDPVLFSGTLRYN 1191
            |.||||||:|||::..::.|.. ...|.:.:|.:||..:.|..||.::|:|||||||.|||:|.|
pombe  1210 IAIVGRTGSGKSTMGLTLLRFTMIMSGAVEVDGIDINSLDLEVLRQRISLIPQDPVLISGTVRSN 1274

  Fly  1192 LDPMDERSDEEMWKALGDVELRSYVSTLIGGLNCRMYD------------GGSNFSVGQRQLVCL 1244
            |||.:|..|.|    |.::...:...:|:...|....|            ||.|||.||||::.|
pombe  1275 LDPFEEYGDGE----LNEILKTASCESLVQASNKNSLDAFAIHLDTPVDSGGVNFSSGQRQILAL 1335

  Fly  1245 ARAILRHNKILIMDEATANVDPETDKLIQQTIRSKFAHCTVLTIAHRLHTVMDSDRVLVMDAGEV 1309
            |||::|.::|:|:||:||:||..||:.|||.:|:.|.|.|||.||||:.|::|.|:|||:|:|:.
pombe  1336 ARALVRKSRIVILDESTASVDDTTDRRIQQMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKT 1400

  Fly  1310 RELGHPYEL 1318
            .|.|.|..|
pombe  1401 VEFGSPKSL 1409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdogNP_651678.1 CFTR_protein 12..1343 CDD:273530 367/1369 (27%)
ABC_membrane 94..360 CDD:294371 62/274 (23%)
ABCC_MRP_domain1 448..650 CDD:213217 76/208 (37%)
ABC_membrane 821..1046 CDD:294371 59/233 (25%)
ABCC_MRP_domain2 1096..1315 CDD:213211 101/231 (44%)
ybt1NP_594585.1 CFTR_protein 192..1416 CDD:273530 367/1369 (27%)
ABC_membrane 266..537 CDD:294371 62/276 (22%)
ABCC_MRP_domain1 577..782 CDD:213217 76/204 (37%)
ABC_membrane 866..1094 CDD:294371 58/289 (20%)
ABCC_MRP_domain2 1178..1406 CDD:213211 101/231 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0054
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100026
Panther 1 1.100 - - O PTHR24223
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.900

Return to query results.
Submit another query.