DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdog and pgp-11

DIOPT Version :9

Sequence 1:NP_651678.1 Gene:rdog / 43450 FlyBaseID:FBgn0039644 Length:1374 Species:Drosophila melanogaster
Sequence 2:NP_001364583.1 Gene:pgp-11 / 183971 WormBaseID:WBGene00004005 Length:1241 Species:Caenorhabditis elegans


Alignment Length:1410 Identity:306/1410 - (21%)
Similarity:549/1410 - (38%) Gaps:342/1410 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 DELKRSN--PSVVRMILRAYGKIFVPMGLAFSISETICK----SLMPLFLGGLVGYFATNQTDIS 126
            ||.|.|:  || :|..|...........|.|.|:..||.    ::.|:.|  |:|.:.|:....:
 Worm    16 DESKVSDVTPS-IRQSLNLMINFAKKSDLIFIITALICALLGGTIQPVVL--LIGGWITDLYLTN 77

  Fly   127 ENTA----YLYAM----------GIVICMLVPVITFHPFIFYIFQVGT-----KLRLALSGLIYR 172
            .|||    :||::          |::|.:|..:..      ...|.||     .:|....|.:.|
 Worm    78 GNTAGNDEFLYSVLTLIYAGLGFGVIILVLALIQG------VCIQRGTSRILDSIRKEFLGAVLR 136

  Fly   173 K---VLQVSKSSSNDGLRGRAINILSNDLGRFDVALCFLHDTWKGPMESILIGFLMYREIGISAV 234
            :   .|....|.|........|.::|:.||.   ..|.|           :.||.|:    .|::
 Worm   137 QDANWLDKHSSGSITCQLNENIEVISDGLGN---KCCML-----------VRGFAMF----TSSI 183

  Fly   235 IGVSFM---LSFI-----PLQAWAAKKAAYYRQMTAER----TDMRVKLMNEIIQGIQVIKMYAW 287
            |..:|:   |:||     |:.|:.........:::.|.    :.....::.|.|..::.::....
 Worm   184 IACAFINWQLTFITFTMGPVSAFVLHLLTKVNEVSNEELMSLSAQSHAIIEESILNVRTVQSCNG 248

  Fly   288 EKSFARVIAEVRLKEVKAIRGTAYIHA------ALGCTSMISPLSVFLALCSYVY------LGDP 340
            :......:.:|. :::|.....:...|      ||.....|:.:|:|.. |...:      .||.
 Worm   249 QNFMITKLNQVN-EKIKKFYNKSTFWAGFFDGLALFVIYFITGISLFFG-CRLYFNQEIGKAGDV 311

  Fly   341 LTAQKVYTVSSYF-NMLNDSMVTFWPMSITFIA--EALVSAKRCKDFLLDGDKAEVPINLEANQQ 402
            :.......|:.|| .:|...|.:....:.:|:.  :.:.||.:.     :|.:.|:.|:      
 Worm   312 ILIVNTICVTGYFLGLLGPHMSSLQQAATSFLLLYKTIESAPKS-----EGKEGEIKIS------ 365

  Fly   403 TGKNKRKISKKDKQKNVELNGSLLSNGQVHHNRLRDYDPEATKKCVVLKNVSASWDTSDGHANCA 467
                                                    :|:..:..::|...:.|.|   |..
 Worm   366 ----------------------------------------STRGNIEFRDVRFKYFTRD---NEV 387

  Fly   468 IEDFSTDIKDQTLAAVVGPVGAGKSSFLNVLLGEVGIDKGEAMVHGK-------------ISYAS 519
            ::..|..:......|:||..|.|||:.:.:|.......:||.::.||             |....
 Worm   388 LQGLSLQVLPGQTVALVGTSGCGKSTSIGLLTKLYRASEGEILIDGKNIDMLDAKSLRQQIGIVQ 452

  Fly   520 QESWVFEGTIRDNIVFVEDYNERRYKKVVKVCGLERDMELLPRGDLTVVGERGVSLSGGQKARVS 584
            ||..:|:|||.:||....:.:|...|....:......:|.|..|..|.:|..||.||||||.|:.
 Worm   453 QEPKLFDGTIMENIKLGRNVDEETIKTAADIANASSFIEKLENGYETRLGPGGVQLSGGQKQRIC 517

  Fly   585 LARAVYRKADIYLLDDPLSAVDTHVGKHIFDRCIRDFLSNKIRILVTHQVQYLFDVEHLLLMGSG 649
            :|||:.....|.|||:..||:|:| .:||.::.:......:..|::.|::..|..|:.:.::..|
 Worm   518 IARALVTSPSILLLDEATSALDSH-NEHIVNKALTKASEGRTTIIIAHRLSSLKSVDRIYVLDQG 581

  Fly   650 KIMAQGSYQEL-------QRSRQFQFLEQT-----QHDESGIDTHSVSSYLSRSDSEKS------ 696
            |....|::.||       .|..:.|.:||:     :.:|           |.|::..|.      
 Worm   582 KTKEIGTHDELILLGGIYARLAKSQEVEQSSKKDWEREE-----------LRRAEKMKKKGRTVE 635

  Fly   697 ---------MEHQHNQLLRPDEHVEDV--NQEQQTVGSIKMHVYASYIKALDSTFLLGIVISLFV 750
                     .||:||       .|..|  ..|:|.:....:....:|:.....|.:|  :|:|.:
 Worm   636 IIEPNSTILQEHEHN-------FVGSVITENEEQKISFSGISKLFNYLPKHRKTLIL--IIALLI 691

  Fly   751 CARIMLT--GV--------------DYFLSRWVIWEEQIAVNRTTTLLNETDTTIANDTLPINAT 799
            ...|.|.  |:              ||....::...:|               |:|..|..|..|
 Worm   692 PRAIELCSYGIGMSFAFKTLQRSKDDYMTWNYITLAQQ---------------TLAGITFWILHT 741

  Fly   800 D-PYIAPLLASDIQAGIRQELVLFYATILGATLIVYLIRTFGFFKMCLRISLHLHDRLFRGITRA 863
            . .|:...||:::...::||:                                    |...:.:.
 Worm   742 SLMYLCGWLANEVMNEVKQEM------------------------------------LSEVLNKP 770

  Fly   864 SMYFFNTNSS-----GRILNRFSKDIRTVDTDLPHTLLDCL-----AFIIDVSGVV--IIVAIAN 916
            ..||.|..:|     .||::.            .|....||     .|:..::|.:  :::|...
 Worm   771 IPYFDNPETSPSACVSRIISH------------AHNCYACLDHRAIRFVWFIAGTIFSLLLAFPF 823

  Fly   917 YWLLIPAAIIG----VILGMIRYLYVNTSRSVKRLESI-SRSPVFSLTNQTFQGLTTIRALQAQS 976
            .|.|   .::|    ::|.:....:|:.:......:|: .:|..|::  :..:.:..|:.|..:.
 Worm   824 VWEL---GVLGLGITILLTIFSLHFVSVAHRAHSEKSVMDKSGEFAV--EIVEHIRAIKLLAVEG 883

  Fly   977 ALEQEFHEYQNTN---------TSAWFLFLSCTRAFALWSDVLCIVYMTAVTFSFLLLKDEFDSG 1032
            ..|.:|.||..|:         .|:  |..:.|:::....|:|.....|     .|:....:...
 Worm   884 YFENKFSEYLKTSEIYENKIGFVSS--LNFAITQSYVFACDMLLFFVGT-----LLIYHGRYSPD 941

  Fly  1033 DVGLAILHSTTMTGMCQWGMRQTA----ELENQMTSVERVLEYTEQ---PSEALLETPEKFKPKS 1090
            .|.||.    ....|..||:...:    |:.....|..::..:.::   .|.:.|..||      
 Worm   942 KVFLAF----NGAQMSAWGVMYFSPWFPEIVRGSASANQIFSFFDKNRTNSTSGLSKPE------ 996

  Fly  1091 EWPSKGRIEFINFKLRY-SPKEAPVLKDLNFTIEPREKIGIVGRTGAGKSSIIQSIFRL-ACNEG 1153
               ..|::|..:....| |.....|.:..:..|.....|.:||.:|.|||:||..:.|. :...|
 Worm   997 ---INGKVEVSDVTFAYPSTPHRNVCEGFSLNIPKGHSIALVGASGCGKSTIISMLERFYSAKAG 1058

  Fly  1154 MIRIDDVDIEHIGLHDLRSQVSIIPQDPVLFSGTLRYNLD-PMDERSDEEMWKALGDVELRSYVS 1217
            .|.:||.||:.|.::.||:.:|::.|:||||:.|:|.|:. .:||.|.||:.||........::.
 Worm  1059 RISVDDNDIDGIDVNHLRNNISVVGQEPVLFNATIRENITIGIDEVSVEEVQKACKAANAAGFIE 1123

  Fly  1218 TLIGGLNCRMYDGGSNFSVGQRQLVCLARAILRHNKILIMDEATANVDPETDKLIQQTIRSKFAH 1282
            :...|.:..:.:||::.|.||:|.:.:||||:|..|||::||||:.:|.::::::|:.:||....
 Worm  1124 SFPLGYDTIVGEGGASLSGGQKQRIAIARAIIRKPKILLLDEATSALDTQSEEIVQKALRSATTG 1188

  Fly  1283 CTVLTIAHRLHTVMDSDRVLVMDAGEVRELGHPYELLQRTGGYLR 1327
            .|.:.:||||.||...|.:..:..|.|.|.|...||:.....|.|
 Worm  1189 RTSIIVAHRLSTVQHCDTIYYISRGAVAEYGTHAELVAMDSKYAR 1233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdogNP_651678.1 CFTR_protein 12..1343 CDD:273530 306/1410 (22%)
ABC_membrane 94..360 CDD:294371 62/316 (20%)
ABCC_MRP_domain1 448..650 CDD:213217 59/214 (28%)
ABC_membrane 821..1046 CDD:294371 38/250 (15%)
ABCC_MRP_domain2 1096..1315 CDD:213211 76/221 (34%)
pgp-11NP_001364583.1 PTZ00265 38..1235 CDD:240339 298/1387 (21%)
MdlB 46..607 CDD:224055 133/643 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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