DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdog and Abcc3

DIOPT Version :9

Sequence 1:NP_651678.1 Gene:rdog / 43450 FlyBaseID:FBgn0039644 Length:1374 Species:Drosophila melanogaster
Sequence 2:NP_542148.2 Gene:Abcc3 / 140668 RGDID:71101 Length:1523 Species:Rattus norvegicus


Alignment Length:1456 Identity:471/1456 - (32%)
Similarity:733/1456 - (50%) Gaps:261/1456 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PKN------PFTKANFFSQWSFWWMRDLFKRGLQGPLTDEELYQHRKTLDSERVTNKFAELW--- 66
            |:|      |...|.|||:.||||...|...|.:.||.|.:|:...:...|.:|..:..|.|   
  Rat   199 PENLDTNPCPEASAGFFSRLSFWWFTKLAILGYRRPLEDSDLWSLSEEDCSHKVVQRLLEAWQKQ 263

  Fly    67 ------------------EDEL------KRSNPSVVRMILRAYGKIFVPMGLAFSISETICKSLM 107
                              |||:      |...||.:|.::|.:....: ||..|.:.:.:...:.
  Rat   264 QTQASGPQTAALEPKIAGEDEVLLKARPKTKKPSFLRALVRTFTSSLL-MGACFKLIQDLLSFIN 327

  Fly   108 PLFLGGLVGYFATNQTDISENTA-----YLYAMGIVICMLVPVITFHPFIFYIFQVGTKLRLALS 167
            |..|..|:.:       ||:.||     :|.|..:.:...:..:..|.....||.:..::|.|:.
  Rat   328 PQLLSILIRF-------ISDPTAPTWWGFLLAGLMFVSSTMQTLILHQHYHCIFVMALRIRTAII 385

  Fly   168 GLIYRKVLQVSKSSSNDGLRGRAINILSNDLGRFDVALCFLHDTWKGPMESILIGFLMYREIGIS 232
            |:||||.|.::.|...:...|..:|::|.|..||.....|::..|..|::.||..:.:::.:|.|
  Rat   386 GVIYRKALTITNSVKREYTVGEMVNLMSVDAQRFMDVSPFINLLWSAPLQVILAIYFLWQILGPS 450

  Fly   233 AVIGVSFMLSFIPLQAWAAKKAAYYRQMTAERTDMRVKLMNEIIQGIQVIKMYAWEKSFARVIAE 297
            |:.||:.::..|||....:.|...|:....:..|.|:|||:||:.||:|:|:||||.:|...:..
  Rat   451 ALAGVAVIVLLIPLNGAVSMKMKTYQVQQMKFKDSRIKLMSEILNGIKVLKLYAWEPTFLEQVEG 515

  Fly   298 VRLKEVKAIRGTAYIHAALGCTSMISPLSVFLALCS-----------YVYL--GDPLTAQKVYTV 349
            :|..|::.:|..||:.|          :|.|:.:|:           ||.:  .:.|.|:|.:..
  Rat   516 IRQSELQLLRKGAYLQA----------ISTFIWVCTPFMVTLITLGVYVCVDKNNVLDAEKAFVS 570

  Fly   350 SSYFNMLNDSMVTFWPMSITFIAEALVSAKRCKDFLLDGDKAEVPINLEANQQTGKNKRKISKKD 414
            .|.||:|...: ...|..|:.:.:..||.||.:|||              ||.            
  Rat   571 LSLFNILKIPL-NLLPQLISGMTQTSVSLKRIQDFL--------------NQD------------ 608

  Fly   415 KQKNVELNGSLLSNGQVHHNRLRDYDPEATK-------KCVVLKNVSASWDTSDGHANCAIEDFS 472
                                   :.||:..:       :.:.:.|.:.||...   ....:...:
  Rat   609 -----------------------ELDPQCVERKTISPGRAITIHNGTFSWSKD---LPPTLHSLN 647

  Fly   473 TDIKDQTLAAVVGPVGAGKSSFLNVLLGEVGIDKGEAMVHGKISYASQESWVFEGTIRDNIVFVE 537
            ..|....|.|||||||.||||.::.||||:...:|...|.|.::|..|::|:...|:::|::|.:
  Rat   648 IQIPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGAVSVKGSVAYVPQQAWIQNCTLQENVLFGQ 712

  Fly   538 DYNERRYKKVVKVCGLERDMELLPRGDLTVVGERGVSLSGGQKARVSLARAVYRKADIYLLDDPL 602
            ..|.:||::.::.|.|..|:::||.||.|.:||:|::|||||:.|||||||||..|:|:||||||
  Rat   713 PMNPKRYQQALETCALLADLDVLPGGDQTEIGEKGINLSGGQRQRVSLARAVYSDANIFLLDDPL 777

  Fly   603 SAVDTHVGKHIFDRCI--RDFLSNKIRILVTHQVQYLFDVEHLLLMGSGKIMAQGSYQE-LQRSR 664
            ||||:||.|||||:.|  ...|:.|.|:||||.:.:|...:.::::..|:|...|.|.| ||...
  Rat   778 SAVDSHVAKHIFDQVIGPEGVLAGKTRVLVTHGISFLPQTDFIIVLADGQITEMGHYSELLQHDG 842

  Fly   665 QF-QFL-----EQTQHDESGIDTH----------SVSSYLSRSDSEKSMEHQHNQLLR------- 706
            .| .||     ::.|....|:..|          ::|::...:|:|.::.....|.:|       
  Rat   843 SFANFLRNYAPDENQEANEGVLQHANEEVLLLEDTLSTHTDLTDTEPAIYEVRKQFMREMSSLSS 907

  Fly   707 ---------------------PDEHVED----VNQEQQTVGSIKMHVYASYIKALDSTFLLGIVI 746
                                 |....::    :.:|....|::|:.||..|.|:      :|:..
  Rat   908 EGEGQNRPVLKRYTSSLEKEVPATQTKETGALIKEEIAETGNVKLSVYWDYAKS------VGLCT 966

  Fly   747 SLFVC-----ARIMLTGVDYFLSRWVIWEEQIAVNRTTTLLNETDTTIANDTLPINATDPYIAPL 806
            :||:|     ...:..|.:.:||.|....|:......|::           .|.:.||       
  Rat   967 TLFICLLYAGQNAVAIGANVWLSAWTNDVEEHGQQNNTSV-----------RLGVYAT------- 1013

  Fly   807 LASDIQAGIRQELVLFYATILGATLIVYLIRTFGFFKMCLRISLHLHDRLFRGITRASMYFFNTN 871
                  .||.|.|::..:..   |::|..|:       ..|:   ||..|.....||...||:|.
  Rat  1014 ------LGILQGLLVMLSAF---TMVVGAIQ-------AARL---LHTALLHNQIRAPQSFFDTT 1059

  Fly   872 SSGRILNRFSKDIRTVDTDLPHTLLDCL-AFIIDVSGVVIIVAIANYW--LLIPAAIIGVILGMI 933
            .||||||||||||..:|..|..|:|... :|...:|.:|:|||....:  :::|.|   |..|.:
  Rat  1060 PSGRILNRFSKDIYVIDEVLAPTILMLFNSFYTSISTIVVIVASTPLFCVVVLPLA---VFYGFV 1121

  Fly   934 RYLYVNTSRSVKRLESISRSPVFSLTNQTFQGLTTIRALQAQSALEQEFHEYQ----NTNTSAWF 994
            :..||.|||.:|||||:||||:||..::|..|.:.|||.    ...|:|....    ::|....:
  Rat  1122 QRFYVATSRQLKRLESVSRSPIFSHFSETVTGTSVIRAY----GRVQDFKVLSDAKVDSNQKTTY 1182

  Fly   995 LFLSCTRAFALWSDVL--CIVYMTAVTFSFLLL-KDEFDSGDVGLAILHSTTMTGMCQWGMRQTA 1056
            .:::..|...:..:.:  |:|..:|:   |.:: ::..:.|.|||::.::..:|....|.:|..:
  Rat  1183 PYIASNRWLGVHVEFVGNCVVLFSAL---FAVIGRNSLNPGLVGLSVSYALQVTLSLNWMIRTLS 1244

  Fly  1057 ELENQMTSVERVLEYTEQPSEA--LLET---PEKFKPKSEWPSKGRIEFINFKLRYSPKEAPVLK 1116
            :||:.:.:||||.||::..:||  :||:   ||      .||..|.:||.|:.:||.|....|||
  Rat  1245 DLESNIIAVERVKEYSKTETEAPWVLESNRAPE------GWPRSGVVEFRNYSVRYRPGLELVLK 1303

  Fly  1117 DLNFTIEPREKIGIVGRTGAGKSSIIQSIFR-LACNEGMIRIDDVDIEHIGLHDLRSQVSIIPQD 1180
            :|...::..||:||||||||||||:...:|| |...||.|.||.:::.||||||||||::|||||
  Rat  1304 NLTLHVQGGEKVGIVGRTGAGKSSMTLCLFRILEAAEGEIFIDGLNVAHIGLHDLRSQLTIIPQD 1368

  Fly  1181 PVLFSGTLRYNLDPMDERSDEEMWKALGDVELRSYVSTLIGGLNCRMYDGGSNFSVGQRQLVCLA 1245
            |:|||||||.||||....|||::|:.|....|.::||:...||:.:..:||.|.|||||||||||
  Rat  1369 PILFSGTLRMNLDPFGRYSDEDIWRTLELSHLSAFVSSQPTGLDFQCSEGGDNLSVGQRQLVCLA 1433

  Fly  1246 RAILRHNKILIMDEATANVDPETDKLIQQTIRSKFAHCTVLTIAHRLHTVMDSDRVLVMDAGEVR 1310
            ||:||.:::|::|||||.:|.|||.|||.|||::|..||||||||||:|:||.:||||:|.|.|.
  Rat  1434 RALLRKSRVLVLDEATAAIDLETDDLIQGTIRTQFEDCTVLTIAHRLNTIMDYNRVLVLDKGVVA 1498

  Fly  1311 ELGHPYELLQRTGGYLRQLVDNTGAA 1336
            |...|..|: ..||....:..:.|.|
  Rat  1499 EFDSPVNLI-AAGGIFYGMAKDAGLA 1523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdogNP_651678.1 CFTR_protein 12..1343 CDD:273530 470/1455 (32%)
ABC_membrane 94..360 CDD:294371 77/283 (27%)
ABCC_MRP_domain1 448..650 CDD:213217 85/203 (42%)
ABC_membrane 821..1046 CDD:294371 71/234 (30%)
ABCC_MRP_domain2 1096..1315 CDD:213211 126/219 (58%)
Abcc3NP_542148.2 MRP_assoc_pro 7..1522 CDD:188098 469/1453 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345008
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0054
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG51855
OrthoDB 1 1.010 - - D138195at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100026
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.660

Return to query results.
Submit another query.