DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdog and abcb4

DIOPT Version :9

Sequence 1:NP_651678.1 Gene:rdog / 43450 FlyBaseID:FBgn0039644 Length:1374 Species:Drosophila melanogaster
Sequence 2:NP_001303643.1 Gene:abcb4 / 100136865 ZFINID:ZDB-GENE-080204-52 Length:1275 Species:Danio rerio


Alignment Length:1444 Identity:311/1444 - (21%)
Similarity:565/1444 - (39%) Gaps:365/1444 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 KRGLQGPLTDEELYQHRKTLDSERVTNKFAELWEDELKRSNPSVVRMIL-----RAYGKIFVPMG 93
            |..:.||:   ||:::..::|                      ::.|:|     .|.|.:...|.
Zfish    35 KLEMVGPI---ELFRYADSID----------------------ILLMMLGLIMSMANGAVLPLMV 74

  Fly    94 LAFS------ISETICKSLMPLFLGGLVGYFATNQTDISE----NTAYLYAMGIVICMLVPVITF 148
            :.|.      :.:|:..:|..:.|.....:..|:...:.|    :..|...||.|:.    |..:
Zfish    75 IVFGDMTDSFVDDTLLDNLKNITLPPNFTFPETSNITLGEKMTTHAIYYSIMGFVVL----VAAY 135

  Fly   149 HPFIFYIFQVGTKLRLALSGLIYRKVLQ-------VSKSSS------------NDGLRGRAINIL 194
            ....|:....|.::: .|..:.:..:::       |:::..            |:|: |..:.:|
Zfish   136 MQVAFWTLAAGRQVK-KLRKIFFHSIMKQEIGWFDVNETGQLNTRLTDDVYKINEGI-GDKLGML 198

  Fly   195 SNDLGRFDVALCFLHDTWKGPMESILIGF-----LMYREIGISAVIGVSFMLSFIPLQAWAAKKA 254
            ..:|..|.|              .|:|||     |....:.:|.::|:|..:....:..:.:|:.
Zfish   199 IQNLTTFIV--------------GIIIGFAKGWKLTLVILAVSPLLGISAAVIGKVMTTFTSKEQ 249

  Fly   255 AYYRQMTAERTDMRVKLMNEIIQGIQVIKMYAWEKSFARVIAEVRLKEVK------------AIR 307
            ..|.:..|        :..|::..|:.:..:..:|           ||:|            .:|
Zfish   250 TAYAKAGA--------VAEEVLSSIRTVFAFGGQK-----------KEIKRYHKNLEDAKNVGVR 295

  Fly   308 GTAYIHAALGCTSMISPLSVFLALCSYVYLGDPLTAQKVYTVSSYFNMLNDSMVTFWPMSITFIA 372
            ....::.|:|.|..:..:|..||.    :.|..|.....||:.               |.:|...
Zfish   296 KAITVNIAMGFTFFMIYMSYALAF----WYGSTLILGGEYTIG---------------MLLTIFF 341

  Fly   373 EALVSAKRCKDFLLDGDKAEVPINLEANQQTGKNKRKISKKDKQKNVELNGSLLSNGQVHHNRLR 437
            ..|:.|     |.|.        ....|.||..:.|..:.|..|        ::.    |..::.
Zfish   342 AVLIGA-----FGLG--------QTSPNIQTFSSARGAAHKVFQ--------IID----HEPKIN 381

  Fly   438 DYDPEATKKCVV-----LKNVSASWDTSDGHANCAIEDFSTDIK-----------DQTLAAVVGP 486
            .:..|..|..||     .||:...:.:.|            |:|           .||: |:||.
Zfish   382 SFSEEGYKLDVVKGNIEFKNIHFRYPSRD------------DVKVLNGMNLKVMSGQTI-ALVGS 433

  Fly   487 VGAGKSSFLNVLL-------GEVGIDKGEAM---VHG---KISYASQESWVFEGTIRDNIVF-VE 537
            .|.|||:.:.:|.       |.|.||..:..   |.|   .|...|||..:|..||.:||.: .:
Zfish   434 SGCGKSTTIQLLQRFYDPQEGSVSIDGHDIRSLNVRGLRELIGVVSQEPVLFATTIAENIRYGRQ 498

  Fly   538 DYNERRYKKVVKVCGLERDMELLPRGDLTVVGERGVSLSGGQKARVSLARAVYRKADIYLLDDPL 602
            |..:...::..:.......:..||....|:||:||..:|||||.|:::|||:.|...|.|||:..
Zfish   499 DVTQDEIEQAAREANAYNFIMKLPDKFETLVGDRGTQMSGGQKQRIAIARALVRNPKILLLDEAT 563

  Fly   603 SAVDTHVGKHIFDRCIRDFLSNKIRILVTHQVQYLFDVEHLLLMGSGKIMAQGSYQELQRSR--- 664
            ||:|.. .:.|....:......:..|:|.|::..:.:.:.:....:|:|:..|::.||...:   
Zfish   564 SALDAE-SETIVQAALDKVRLGRTTIVVAHRLSTIRNADVIAGFQNGEIVELGTHDELMERKGIY 627

  Fly   665 -------QFQFLEQTQHD--ESGID--THSVSS--------YLSRSDSEKSMEHQHNQLLRPDEH 710
                   .|:..|..:.|  |..:|  :.||||        ..|||.|||.::.:.    :|.|.
Zfish   628 HSLVNMQMFKSTEVAEEDSEEMTMDEKSPSVSSMNERTLFRQKSRSGSEKELKEEE----KPTEE 688

  Fly   711 VEDVNQEQQTVGSIKMHVYASYIKALDSTFLLGIVISLFVCARIMLTGVDYFLSRWVIWEEQIAV 775
            .:..|....||  :|:: |..:     ...::||     :||.|. .|:....:  ||:.:.|||
Zfish   689 EKVPNVSFLTV--LKLN-YPEW-----PYMVVGI-----LCATIN-GGMQPAFA--VIFSKIIAV 737

  Fly   776 NRTTTLLNETDTTIANDTLPINATDPYIAPLLASDIQAGIRQELVLFYATILGATLIVY---LIR 837
                  ..|.|..:                         :||...|:.....|..::.:   .::
Zfish   738 ------FAEPDQNL-------------------------VRQRCDLYSLLFAGIGVLSFFTLFLQ 771

  Fly   838 TFGFFKMCLRISLHLHDRLFRGITRASMYFFN--TNSSGRILNRFSKDIRTVDTDLPHTLLDCLA 900
            .|.|.|....:::.|..:.|..:.|..:.:::  .||.|.:..|.:.|...|. ......|..||
Zfish   772 GFCFGKAGELLTMRLRFKAFNAMMRQDLAWYDDTKNSVGALTTRLAADTAQVQ-GATGVRLATLA 835

  Fly   901 FIIDVSGVVIIVAIANYWLL-------IP-AAIIGVILGMIRYLYVNTSRSVKRLESISRSPVFS 957
            ..:...|..|:::....|.|       :| .|:.|.|  .::.|..:..:..|.||...:     
Zfish   836 QNVANLGTAIVISFVYGWQLTLLILSIVPIMAVAGAI--QMKLLAGHALKDKKELEQAGK----- 893

  Fly   958 LTNQTFQGLTTIRALQAQSALEQEFHE-----YQNTNTSA--------------WFLFLSCTRAF 1003
            :..:..:.:.|:.:|..:|..|..:.|     |:|....|              :|.:..|.: |
Zfish   894 IATEAIENVRTVVSLTRESKFESLYEENLIVPYKNAKKKAHVFGLTFSFSQAMIYFAYAGCFK-F 957

  Fly  1004 ALWSDVLCIVYMTAVTFS--FLLLKDEFDSGDVGLAILHSTTMTG----------MCQWGMRQTA 1056
            ..|     ::....:||.  ||::.          |:::.....|          ..:.......
Zfish   958 GSW-----LIEQKLMTFEGVFLVIS----------AVVYGAMAVGEANSFTPNYAKAKMSASHVL 1007

  Fly  1057 ELENQMTSVERVLEYTEQPSEALLETPEKFKPKSEWPSKGRIEFINFKLRY-SPKEAPVLKDLNF 1120
            .|.|:..:::...|..::        |:||        :|.:.|.:...:| |..:.|||:.|..
Zfish  1008 MLINRAPAIDNSSEDGDK--------PDKF--------EGNVGFEHVYFKYPSRPDVPVLQGLKL 1056

  Fly  1121 TIEPREKIGIVGRTGAGKSSIIQSIFRL-ACNEGMIRIDDVDIEHIGLHDLRSQVSIIPQDPVLF 1184
            .::..:.:.:||.:|.|||:.||.:.|. ...:|.:.:||.|.:.:.:|.||||:.|:.|:||||
Zfish  1057 RVKKGQTLALVGSSGCGKSTTIQLLERFYDPQQGRVMLDDNDAKQLNIHWLRSQIGIVSQEPVLF 1121

  Fly  1185 SGTLRYNL---DPMDERSDEEMWKALGDVELRSYVSTLIGGLNCRMYDGGSNFSVGQRQLVCLAR 1246
            ..:|..|:   |...|...||:.:|.....:.|::..|......:..|.|:..|.||:|.:.:||
Zfish  1122 DCSLAENIAYGDNSREVDQEEIVEAAKAANIHSFIENLPQRYQTQAGDKGTQLSGGQKQRIAIAR 1186

  Fly  1247 AILRHNKILIMDEATANVDPETDKLIQQTIRSKFAHCTVLTIAHRLHTVMDSDRVLVMDAGEVRE 1311
            ||||:.|:|::||||:.:|.|::|::|..:.......|.:.:||||.|:.::|.:.|:..|.|.|
Zfish  1187 AILRNPKVLLLDEATSALDTESEKIVQDALDKASKGRTCIIVAHRLSTIQNADCIAVVQNGVVVE 1251

  Fly  1312 LGHPYELLQRTGGY 1325
            .|...:||.:.|.|
Zfish  1252 QGTHQQLLSQQGAY 1265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdogNP_651678.1 CFTR_protein 12..1343 CDD:273530 311/1444 (22%)
ABC_membrane 94..360 CDD:294371 50/311 (16%)
ABCC_MRP_domain1 448..650 CDD:213217 61/231 (26%)
ABC_membrane 821..1046 CDD:294371 46/258 (18%)
ABCC_MRP_domain2 1096..1315 CDD:213211 75/223 (34%)
abcb4NP_001303643.1 PTZ00265 55..1266 CDD:240339 305/1399 (22%)
ABC_membrane 60..348 CDD:279056 57/350 (16%)
ABC_MTABC3_MDL1_MDL2 397..634 CDD:213216 64/250 (26%)
ABC_membrane 714..984 CDD:279056 60/332 (18%)
ABC_MTABC3_MDL1_MDL2 1035..1272 CDD:213216 78/231 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.